.gitlab-ci.yml

@@ -15,10 +15,3 @@ image_build:
     CI_COMMIT_SHA_7=$(echo $CI_COMMIT_SHA | cut -c1-7)
     docker build --tag $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7 .
     docker push $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7
-  only:
-    refs:
-      - branches
-    changes:
-      - Dockerfile
-      - requirements.txt
-      - environment.yml
\ No newline at end of file

.renku/datasets/65c1af7b-1878-4dc8-a28a-3eafd68cd2e4/metadata.yml

-- '@id': https://renkulab.io/datasets/65c1af7b-1878-4dc8-a28a-3eafd68cd2e4
-  '@type':
-  - http://purl.org/wf4ever/wfprov#Artifact
-  - http://schema.org/Dataset
-  - http://www.w3.org/ns/prov#Entity
-  http://schema.org/alternateName:
-  - '@value': ham10000__cancer_detection_and_classification__extracted_features
-  http://schema.org/creator:
-  - '@id': mailto:switzerland.ai@gmail.com
-  http://schema.org/dateCreated:
-  - '@value': '2021-04-08T06:15:12.380422+00:00'
-  http://schema.org/description:
-  - '@value': 'Features Extracted from dermatoscopic images in HAM10000 dataset with
-      two different TFhub modules, called BiT_M_Resnet101 and MobileNet. The images
-      were grouped into smaller batches, with train, valid and test subbed types,
-      Each batch have the same proportion of each class as in the original dataset. '
-  http://schema.org/hasPart: []
-  http://schema.org/identifier:
-  - '@value': 65c1af7b-1878-4dc8-a28a-3eafd68cd2e4
-  http://schema.org/isPartOf:
-  - '@id': https://renkulab.io/projects/swissai/amld-2021-workshop
-  http://schema.org/keywords: []
-  http://schema.org/name:
-  - '@value': HAM10000__Cancer_Detection_And_Classification__extracted_features
-  http://schema.org/subjectOf: []
-  http://schema.org/url:
-  - '@value': https://renkulab.io/datasets/65c1af7b-1878-4dc8-a28a-3eafd68cd2e4
-  http://www.w3.org/2000/01/rdf-schema#label:
-  - '@value': 65c1af7b-1878-4dc8-a28a-3eafd68cd2e4
-  http://www.w3.org/ns/prov#atLocation:
-  - '@value': .renku/datasets/65c1af7b-1878-4dc8-a28a-3eafd68cd2e4
-- '@id': https://renkulab.io/projects/swissai/amld-2021-workshop
-  '@type':
-  - http://schema.org/Project
-  - http://www.w3.org/ns/prov#Location
-  http://schema.org/agent:
-  - '@value': 0.12.3
-  http://schema.org/creator:
-  - '@id': mailto:oksana.riba@gmail.com
-  http://schema.org/dateCreated:
-  - '@value': '2021-03-11T22:50:56.687846+00:00'
-  http://schema.org/name:
-  - '@value': AMLD 2021 Workshop
-  http://schema.org/schemaVersion:
-  - '@value': '8'
-  https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate:
-  - '@value': false
-  https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: []
-  https://swissdatasciencecenter.github.io/renku-ontology#templateId:
-  - '@value': python-minimal
-  https://swissdatasciencecenter.github.io/renku-ontology#templateMetadata:
-  - '@value': '{"__template_source__": "https://github.com/SwissDataScienceCenter/renku-project-template",
-      "__template_ref__": "0.1.16", "__template_id__": "python-minimal", "__namespace__":
-      "swissai", "__automated_update__": true, "__repository__": "https://renkulab.io/gitlab",
-      "__sanitized_project_name__": "amld-2021-workshop", "__project_slug__": "swissai/amld-2021-workshop",
-      "description": "Practical part for AMLD 2021 Workshop based on the original
-      work of Pawel Rosikiewicz available at Github: https://github.com/PawelRosikiewicz/SkinDiagnosticAI",
-      "name": "AMLD 2021 Workshop"}'
-  https://swissdatasciencecenter.github.io/renku-ontology#templateReference:
-  - '@value': 0.1.16
-  https://swissdatasciencecenter.github.io/renku-ontology#templateSource:
-  - '@value': https://github.com/SwissDataScienceCenter/renku-project-template
-  https://swissdatasciencecenter.github.io/renku-ontology#templateVersion:
-  - '@value': 11c74ad062891b24b5873d3036eff032eebc973a
-- '@id': mailto:oksana.riba@gmail.com
-  '@type':
-  - http://schema.org/Person
-  - http://www.w3.org/ns/prov#Person
-  http://schema.org/email:
-  - '@value': oksana.riba@gmail.com
-  http://schema.org/name:
-  - '@value': Oksana Riba Grognuz
-  http://www.w3.org/2000/01/rdf-schema#label:
-  - '@value': Oksana Riba Grognuz
-- '@id': mailto:switzerland.ai@gmail.com
-  '@type':
-  - http://schema.org/Person
-  - http://www.w3.org/ns/prov#Person
-  http://schema.org/email:
-  - '@value': switzerland.ai@gmail.com
-  http://schema.org/name:
-  - '@value': pawel rosikiewicz
-  http://www.w3.org/2000/01/rdf-schema#label:
-  - '@value': pawel rosikiewicz

.renku/metadata.yml

@@ -2,7 +2,7 @@
 '@type':
 - http://schema.org/Project
 - http://www.w3.org/ns/prov#Location
-http://schema.org/agent: 0.14.1
+http://schema.org/agent: 0.14.2.dev8
 http://schema.org/creator:
   '@id': mailto:oksana.riba@gmail.com
   '@type':

.renku/refs/datasets/ham10000__cancer_detection_and_classification__extracted_features

-../../datasets/65c1af7b-1878-4dc8-a28a-3eafd68cd2e4/metadata.yml
\ No newline at end of file
+../../datasets/e02efc81-6f6f-462b-ac6a-4f4e6d01e189/metadata.yml
\ No newline at end of file

.renku/refs/datasets/ham10000__cancer_risk_groups__extracted_features

+../../datasets/873a39af-729f-4a1d-b962-91b14e0d58a1/metadata.yml
\ No newline at end of file

.renku/refs/datasets/ham10000_workshop__cancer_detection_and_classification

+../../datasets/fed6d833-3a50-4b01-b7a4-f1af118eec99/metadata.yml
\ No newline at end of file

.renku/refs/datasets/ham10000_workshop__cancer_detection_and_classification__extracted_features

+../../datasets/2070b7e8-495a-44d0-b7bf-6bf9f0f387c2/metadata.yml
\ No newline at end of file

.renku/refs/datasets/ham10000_workshop__cancer_risk_groups

+../../datasets/1d9ca28c-79fa-45f6-9a6e-c75580447e67/metadata.yml
\ No newline at end of file

.renku/refs/datasets/ham10000_workshop__cancer_risk_groups__extracted_features

+../../datasets/7c17c9e4-7d4a-40b9-a240-520dea42aab6/metadata.yml
\ No newline at end of file

.renku/renku.ini

 [renku "interactive"]
 default_url = /lab
+lfs_auto_fetch = true
 
 [renku]
 autocommit_lfs = true
-
+lfs_threshold = 100kb

Dockerfile

@@ -43,7 +43,7 @@ RUN conda env update -q -f /tmp/environment.yml && \
 # RENKU_VERSION determines the version of the renku CLI
 # that will be used in this image. To find the latest version,
 # visit https://pypi.org/project/renku/#history.
-ARG RENKU_VERSION=0.14.0
+ARG RENKU_VERSION=0.14.2.dev8
 
 ########################################################
 # Do not edit this section and do not add anything below