renku run papermill notebooks/examples/openzh-covid-19-example.ipynb runs/openzh-covid-19-example.run.ipynb -p save_figures True -p data_path data/openzh-covid-19/ -p figures_path figures/

Rok Roškar authored 4 years ago and Rok Roškar committed 4 years ago

renku dataset add ch-population-statistics -d ch-population-by-age-canton.xls https://www.bfs.admin.ch/bfsstatic/dam/assets/9635943/master

renku dataset add openzh-covid-19 -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SO_total.csv https://github.com/openZH/covid_19.git

renku dataset add covid-19-italy /Users/ableuler/tmp/dati-andamento-nazionale-description.json /Users/ableuler/tmp/dati-province-description.json /Users/ableuler/tmp/dati-regioni-description.json

renku dataset add openzh-covid-19 -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_FR_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_GE_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_GL_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_JU_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_LU_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_NE_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_OW_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SH_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SZ_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_VD_total.csv -s fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_VS_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_ZG_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_NW_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_GR_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_AR_alter_geschlecht.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_AI_alter_geschlecht.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_FL_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_UR_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_TI_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_SG_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_AR_total.csv https://github.com/openZH/covid_19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_AI_total.csv https://github.com/openZH/covid_19.git

renku dataset add covid-19-italy -s dati-andamento-nazionale/dpc-covid19-ita-andamento-nazionale.csv https://github.com/pcm-dpc/COVID-19.git

renku dataset add covid-19-italy -s dati-regioni/dpc-covid19-ita-regioni.csv https://github.com/pcm-dpc/COVID-19.git

renku dataset add covid-19-italy -s dati-province/dpc-covid19-ita-province.csv https://github.com/pcm-dpc/COVID-19.git

renku dataset add covid-19-italy -s dati-json/dpc-covid19-ita-regioni.json https://github.com/pcm-dpc/COVID-19.git

renku dataset add covid-19-italy -s dati-json/dpc-covid19-ita-province.json https://github.com/pcm-dpc/COVID-19.git

renku dataset add covid-19-italy -s dati-json/dpc-covid19-ita-andamento-nazionale.json https://github.com/pcm-dpc/COVID-19.git

renku dataset add openzh-covid-19 -s COVID19_Fallzahlen_Kanton_AG_total.csv https://github.com/openZH/covid_19.git

renku dataset add covidtracking data/covidtracking/states-daily.json data/covidtracking/states-metadata.json

renku run papermill -p out_folder ./data/covidtracking/ --inject-paths notebooks/process/download-covidtracking-data.ipynb runs/download-covidtracking-data.runs.ipynb

renku dataset add openzh-covid-19 https://github.com/openZH/covid_19.git -s COVID19_Cases_Cantons_CH_total.csv -s COVID19_Fallzahlen_Kanton_BE_total.csv -s COVID19_Fallzahlen_Kanton_BL_total.csv -s COVID19_Fallzahlen_Kanton_BS_total.csv -s COVID19_Fallzahlen_Kanton_TG_total.csv -s COVID19_Fallzahlen_Kanton_ZH_alter_geschlecht.csv -s COVID19_Fallzahlen_Kanton_ZH_total.csv

renku run papermill -p ts_folder ./data/covid-19_jhu-csse/ -p worldmap_path ./data/worldmap/country_centroids.csv -p out_folder ./data/geodata/ --inject-paths notebooks/CompileGeoData.ipynb runs/CompileGeoData.run.ipynb

renku dataset add worldmap --dst country_centroids.csv http://worldmap.harvard.edu/download/wfs/34645/csv?outputFormat=csv&service=WFS&request=GetFeature&format_options=charset%3AUTF-8&typename=geonode%3Acountry_centroids_az8&version=1.0.0

renku dataset add covid-19-rates data/covid-19_rates/ts_rates_19-covid-confirmed.csv data/covid-19_rates/ts_rates_19-covid-deaths.csv data/covid-19_rates/ts_rates_19-covid-recovered.csv

renku run papermill -p ts_folder ./data/covid-19_jhu-csse/ -p wb_path ./data/worldbank/SP.POP.TOTL.zip -p out_folder ./data/covid-19_rates/ --inject-paths notebooks/ToRates.ipynb runs/ToRates.run.ipynb

renku dataset add worldbank --dst SP.POP.TOTL.zip http://api.worldbank.org/v2/en/indicator/SP.POP.TOTL?downloadformat=csv

renku dataset add covid-19_jhu-csse --source csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-Recovered.csv https://github.com/CSSEGISandData/COVID-19.git

renku dataset add covid-19_jhu-csse --source csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-Deaths.csv https://github.com/CSSEGISandData/COVID-19.git

renku dataset add covid-19_jhu-csse --source csse_covid_19_data/csse_covid_19_time_series/time_series_19-covid-Confirmed.csv https://github.com/CSSEGISandData/COVID-19.git