Folder structure cleanup

Clean up the folder structure:

• Examples are in their own folder
• Processing notebooks are in their own folder

.renku/workflow/7f7dffbbb1264ae2a646824c0fd83a20_papermill.cwl

+arguments: []
+baseCommand:
+- papermill
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default: ts_folder
+    inputBinding:
+      position: 1
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_10:
+    default: runs/ToRates.run.ipynb
+    inputBinding:
+      position: 10
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_2:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/covid-19_jhu-csse
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: Directory
+  input_3:
+    default: wb_path
+    inputBinding:
+      position: 3
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_4:
+    default:
+      class: File
+      path: ../../data/worldbank/SP.POP.TOTL.zip
+    inputBinding:
+      position: 4
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_5:
+    default: geodata_path
+    inputBinding:
+      position: 5
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_6:
+    default:
+      class: File
+      path: ../../data/geodata/geo_data.csv
+    inputBinding:
+      position: 6
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_7:
+    default: out_folder
+    inputBinding:
+      position: 7
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_8:
+    default: data/covid-19_rates
+    inputBinding:
+      position: 8
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_9:
+    default:
+      class: File
+      path: ../../notebooks/process/ToRates.ipynb
+    inputBinding:
+      position: 9
+      prefix: --inject-paths
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_10)
+    streamable: false
+    type: File
+  output_1:
+    outputBinding:
+      glob: $(inputs.input_8)
+    streamable: false
+    type: Directory
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: runs
+    writable: true
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: data/covid-19_rates
+    writable: true
+  - entry: $(inputs.input_2)
+    entryname: data/covid-19_jhu-csse
+    writable: false
+  - entry: $(inputs.input_4)
+    entryname: data/worldbank/SP.POP.TOTL.zip
+    writable: false
+  - entry: $(inputs.input_6)
+    entryname: data/geodata/geo_data.csv
+    writable: false
+  - entry: $(inputs.input_9)
+    entryname: notebooks/process/ToRates.ipynb
+    writable: false
+successCodes: []
+temporaryFailCodes: []