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Automatic update - auto-update_2020-11-18_08-03

Merged CI-bot requested to merge auto-update_2020-11-18_08-03 into master
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4
 
class: Workflow
 
cwlVersion: v1.0
 
hints: []
 
inputs:
 
input_1:
 
default: states-metadata.json
 
streamable: false
 
type: string
 
input_2:
 
default: out_folder
 
streamable: false
 
type: string
 
input_3:
 
default: data/covidtracking
 
streamable: false
 
type: string
 
input_4:
 
default:
 
class: File
 
path: ../../notebooks/process/download-covidtracking-data.ipynb
 
streamable: false
 
type: File
 
input_5:
 
default: runs/download-covidtracking-data.runs.ipynb
 
streamable: false
 
type: string
 
input_6:
 
default: states-daily.json
 
streamable: false
 
type: string
 
outputs:
 
output_0:
 
outputSource: step_2/output_0
 
streamable: false
 
type: File
 
output_3:
 
outputSource: step_2/output_1
 
streamable: false
 
type: Directory
 
requirements: []
 
steps:
 
step_1:
 
in:
 
filename: input_1
 
input_directory: step_2/output_1
 
out:
 
- output_file
 
run:
 
arguments: []
 
baseCommand:
 
- 'true'
 
class: CommandLineTool
 
cwlVersion: v1.0
 
hints: []
 
inputs:
 
filename:
 
default: states-metadata.json
 
streamable: false
 
type: string
 
input_directory:
 
streamable: false
 
type: Directory
 
outputs:
 
output_file:
 
outputBinding:
 
glob: $(inputs.filename)
 
streamable: false
 
type: File
 
permanentFailCodes: []
 
requirements:
 
- &id001
 
class: InlineJavascriptRequirement
 
- &id002
 
class: InitialWorkDirRequirement
 
listing: $(inputs.input_directory.listing)
 
successCodes: []
 
temporaryFailCodes: []
 
step_2:
 
in:
 
input_1: input_2
 
input_2: input_3
 
input_3: input_4
 
input_4: input_5
 
out:
 
- output_1
 
- output_0
 
run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
 
step_3:
 
in:
 
filename: input_6
 
input_directory: step_2/output_1
 
out:
 
- output_file
 
run:
 
arguments: []
 
baseCommand:
 
- 'true'
 
class: CommandLineTool
 
cwlVersion: v1.0
 
hints: []
 
inputs:
 
filename:
 
default: states-daily.json
 
streamable: false
 
type: string
 
input_directory:
 
streamable: false
 
type: Directory
 
outputs:
 
output_file:
 
outputBinding:
 
glob: $(inputs.filename)
 
streamable: false
 
type: File
 
permanentFailCodes: []
 
requirements:
 
- *id001
 
- *id002
 
successCodes: []
 
temporaryFailCodes: []
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