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Commit dff1a516 authored by Rok Roškar's avatar Rok Roškar
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fix docker build

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FROM renku/renkulab:renku0.9.1-py3.7-0.5.2 FROM renku/renkulab:renku0.9.1-py3.7-0.5.2
# Uncomment and adapt if code is to be included in the image # For some reason need to be root to install from symlink
COPY src /code/src COPY src /code/src
RUN ln -s /code/src
# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
...@@ -15,8 +16,10 @@ COPY src /code/src ...@@ -15,8 +16,10 @@ COPY src /code/src
# USER ${NB_USER} # USER ${NB_USER}
# install the python dependencies # install the python dependencies
USER root
COPY requirements.txt environment.yml /tmp/ COPY requirements.txt environment.yml /tmp/
RUN conda env update -q -f /tmp/environment.yml && \ RUN conda env update -q -f /tmp/environment.yml && \
/opt/conda/bin/pip install -r /tmp/requirements.txt && \ /opt/conda/bin/pip install -r /tmp/requirements.txt && \
conda clean -y --all && \ conda clean -y --all && \
conda env export -n "root" conda env export -n "root"
USER ${NB_USER}
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