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Commit c737eb91 authored by Rok Roškar's avatar Rok Roškar
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renku run --input data/covid-19-italy/dpc-covid19-ita-regioni.csv --input...

renku run --input data/covid-19-italy/dpc-covid19-ita-regioni.csv --input data/covid-19-us-nyt/us-counties.csv --input data/covid-19-spain/ --input data/covid-19-ecdc/covid-19-ecdc.csv papermill notebooks/datasets_summary.ipynb runs/dataset_summary.run.ipynb -p data_path data/ -p atlas_path data/atlas/
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arguments: []
baseCommand:
- papermill
class: CommandLineTool
cwlVersion: v1.0
hints: []
inputs:
input_1:
default:
class: File
path: ../../notebooks/datasets_summary.ipynb
inputBinding:
position: 1
separate: true
shellQuote: true
streamable: false
type: File
input_10:
default:
class: File
path: ../../data/covid-19-ecdc/covid-19-ecdc.csv
streamable: false
type: File
input_2:
default: runs/dataset_summary.run.ipynb
inputBinding:
position: 2
separate: true
shellQuote: true
streamable: false
type: string
input_3:
default: data_path
inputBinding:
position: 3
prefix: -p
separate: true
shellQuote: true
streamable: false
type: string
input_4:
default:
class: Directory
listing: []
path: ../../data
inputBinding:
position: 4
separate: true
shellQuote: true
streamable: false
type: Directory
input_5:
default: atlas_path
inputBinding:
position: 5
prefix: -p
separate: true
shellQuote: true
streamable: false
type: string
input_6:
default:
class: Directory
listing: []
path: ../../data/atlas
inputBinding:
position: 6
separate: true
shellQuote: true
streamable: false
type: Directory
input_7:
default:
class: File
path: ../../data/covid-19-italy/dpc-covid19-ita-regioni.csv
streamable: false
type: File
input_8:
default:
class: File
path: ../../data/covid-19-us-nyt/us-counties.csv
streamable: false
type: File
input_9:
default:
class: Directory
listing: []
path: ../../data/covid-19-spain
streamable: false
type: Directory
outputs:
output_0:
outputBinding:
glob: $(inputs.input_2)
streamable: false
type: File
permanentFailCodes: []
requirements:
- class: InlineJavascriptRequirement
- class: InitialWorkDirRequirement
listing:
- entry: '$({"listing": [], "class": "Directory"})'
entryname: runs
writable: true
- entry: $(inputs.input_1)
entryname: notebooks/datasets_summary.ipynb
writable: false
- entry: $(inputs.input_4)
entryname: data
writable: false
- entry: $(inputs.input_6)
entryname: data/atlas
writable: false
- entry: $(inputs.input_7)
entryname: data/covid-19-italy/dpc-covid19-ita-regioni.csv
writable: false
- entry: $(inputs.input_8)
entryname: data/covid-19-us-nyt/us-counties.csv
writable: false
- entry: $(inputs.input_9)
entryname: data/covid-19-spain
writable: false
- entry: $(inputs.input_10)
entryname: data/covid-19-ecdc/covid-19-ecdc.csv
writable: false
successCodes: []
temporaryFailCodes: []
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