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Commit 9155c073 authored by Rok Roškar's avatar Rok Roškar Committed by renku 0.15.1
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renku migrate: committing migrated workflow

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.renku/activity_index.yaml
+ 20
− 0
View file @ 9155c073
......@@ -1278,6 +1278,8 @@ figures:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......@@ -1377,6 +1379,8 @@ figures/switzerland-cases-by-canton.html:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......@@ -1472,6 +1476,8 @@ figures/switzerland-deaths-by-canton.html:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......@@ -1670,6 +1676,8 @@ runs/Dashboard.run.ipynb:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
dbff3e420dc61408f4651caae7aae80bdba47a2b:
- .renku/workflow/cd60891231364d9387716c445648c88b_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e1f09f69a57401e836e809cbc434eb9dc760131e:
......@@ -1754,6 +1762,8 @@ runs/covid-19-ecdc.run.ipynb:
- .renku/workflow/d82e328b1b0c4dada0f53af393b5a80c_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
- .renku/workflow/e4bd3c1c4192466c8aefaebc5f099a04_migrated.yaml
e682f2f4744420e3dd03e828085a2dbfb9becc90:
......@@ -1825,6 +1835,8 @@ runs/covid-19-italy.run.ipynb:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......@@ -1878,6 +1890,8 @@ runs/covid-19-us-nyt.run.ipynb:
- .renku/workflow/6286fabf3cb646549a749cab2705414f_migrated.yaml
ca791c1c8320aca7f5d27f2d5a5f31c5f3871bd0:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
- .renku/workflow/e4bd3c1c4192466c8aefaebc5f099a04_migrated.yaml
f6e56f2ae3af49cdc7cebbcc1317cc1aef474af2:
......@@ -1984,6 +1998,8 @@ runs/covidtracking.run.ipynb:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......@@ -2033,6 +2049,8 @@ runs/dataset_summary.run.ipynb:
- .renku/workflow/324a366e615c4a82bd15541a1cff0373_papermill.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e7ec009a51031d77cefc6603f9cd9eef8d7550c7:
......@@ -2567,6 +2585,8 @@ runs/openzh-covid-19.run.ipynb:
- .renku/workflow/6228210a9c184485bd7b351a194b17e1_migrated.yaml
dbd7e18164b3d4c1f3c3745414bef9b8c3a59edc:
- .renku/workflow/20272240227a4bbe892889c02cf78b12_migrated.yaml
e0ad1561bb4b2bc7a356543bf52a9657ae0f88f8:
- .renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml
e154789eba3c72d742c8047b712aada72c2e6524:
- .renku/workflow/a2fd10e90e914373a03a91dc593f158e_migrated.yaml
e2c9b5a552eb3c0a841ec1aa9981773cccf5f741:
......
.renku/workflow/bd3b96457dbc4a0dbbe9d592918ad304.cwl deleted 100644 → 0
+ 0
− 436
View file @ 2b70178c
class: Workflow
cwlVersion: v1.0
hints: []
inputs:
input_1:
default:
class: File
path: ../../notebooks/covidtracking.ipynb
streamable: false
type: File
input_10:
default:
class: Directory
listing: []
path: ../../data/covid-19-ecdc
streamable: false
type: Directory
input_11:
default: atlas_path
streamable: false
type: string
input_12:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_13:
default:
class: File
path: ../../notebooks/datasets_summary.ipynb
streamable: false
type: File
input_14:
default:
class: Directory
listing: []
path: ../../data/covid-19-spain
streamable: false
type: Directory
input_15:
default: ecdc_path
streamable: false
type: string
input_16:
default:
class: Directory
listing: []
path: ../../data/covid-19-ecdc
streamable: false
type: Directory
input_17:
default: runs/dataset_summary.run.ipynb
streamable: false
type: string
input_18:
default: atlas_path
streamable: false
type: string
input_19:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_2:
default: runs/covidtracking.run.ipynb
streamable: false
type: string
input_20:
default: us_path
streamable: false
type: string
input_21:
default:
class: Directory
listing: []
path: ../../data/covid-19-us-nyt
streamable: false
type: Directory
input_22:
default: italy_path
streamable: false
type: string
input_23:
default:
class: File
path: ../../data/covid-19-italy/dpc-covid19-ita-regioni.csv
streamable: false
type: File
input_24:
default: spain_path
streamable: false
type: string
input_25:
default:
class: File
path: ../../notebooks/covid-19-us-nyt.ipynb
streamable: false
type: File
input_26:
default: runs/covid-19-us-nyt.run.ipynb
streamable: false
type: string
input_27:
default: data_path
streamable: false
type: string
input_28:
default:
class: Directory
listing: []
path: ../../data/covid-19-us-nyt
streamable: false
type: Directory
input_29:
default: italy_data_path
streamable: false
type: string
input_3:
default: data_path
streamable: false
type: string
input_30:
default:
class: File
path: ../../data/covid-19-italy/dpc-covid19-ita-regioni.csv
streamable: false
type: File
input_31:
default: atlas_path
streamable: false
type: string
input_32:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_33:
default:
class: File
path: ../../notebooks/Dashboard.ipynb
streamable: false
type: File
input_34:
default: runs/Dashboard.run.ipynb
streamable: false
type: string
input_35:
default: ts_folder
streamable: false
type: string
input_36:
default:
class: Directory
listing: []
path: ../../data/covid-19_jhu-csse
streamable: false
type: Directory
input_37:
default: rates_folder
streamable: false
type: string
input_38:
default:
class: Directory
listing: []
path: ../../data/covid-19_rates
streamable: false
type: Directory
input_39:
default: geodata_path
streamable: false
type: string
input_4:
default:
class: Directory
listing: []
path: ../../data/covidtracking
streamable: false
type: Directory
input_40:
default:
class: File
path: ../../data/geodata/geo_data.csv
streamable: false
type: File
input_41:
default: atlas_path
streamable: false
type: string
input_42:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_43:
default:
class: File
path: ../../notebooks/covid-19-italy.ipynb
streamable: false
type: File
input_44:
default: runs/covid-19-italy.run.ipynb
streamable: false
type: string
input_45:
default: data_folder
streamable: false
type: string
input_46:
default:
class: Directory
listing: []
path: ../../data/covid-19-italy
streamable: false
type: Directory
input_47:
default: atlas_folder
streamable: false
type: string
input_48:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_49:
default:
class: File
path: ../../notebooks/openzh-covid-19.ipynb
streamable: false
type: File
input_5:
default: atlas_path
streamable: false
type: string
input_50:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_51:
default: runs/openzh-covid-19.run.ipynb
streamable: false
type: string
input_52:
default: save_figures
streamable: false
type: string
input_53:
default: 'True'
streamable: false
type: string
input_54:
default: data_path
streamable: false
type: string
input_55:
default:
class: Directory
listing: []
path: ../../data/openzh-covid-19
streamable: false
type: Directory
input_56:
default: figures_path
streamable: false
type: string
input_57:
default: figures
streamable: false
type: string
input_58:
default: atlas_path
streamable: false
type: string
input_6:
default:
class: Directory
listing: []
path: ../../data/atlas
streamable: false
type: Directory
input_7:
default:
class: File
path: ../../notebooks/covid-19-ecdc.ipynb
streamable: false
type: File
input_8:
default: runs/covid-19-ecdc.run.ipynb
streamable: false
type: string
input_9:
default: data_path
streamable: false
type: string
outputs:
output_0:
outputSource: step_6/output_0
streamable: false
type: File
output_1:
outputSource: step_4/output_0
streamable: false
type: File
output_2:
outputSource: step_7/output_1
streamable: false
type: Directory
output_3:
outputSource: step_3/output_0
streamable: false
type: File
output_4:
outputSource: step_2/output_0
streamable: false
type: File
output_5:
outputSource: step_7/output_0
streamable: false
type: File
output_6:
outputSource: step_1/output_0
streamable: false
type: File
output_7:
outputSource: step_5/output_0
streamable: false
type: File
requirements: []
steps:
step_1:
in:
input_1: input_1
input_2: input_2
input_3: input_3
input_4: input_4
input_5: input_5
input_6: input_6
out:
- output_0
run: 2fba4568d8784fb99872b6c8a35f66b9_papermill.cwl
step_2:
in:
input_1: input_7
input_2: input_8
input_3: input_9
input_4: input_10
input_5: input_11
input_6: input_12
out:
- output_0
run: e64b3ddf5a5d4949a231ca0ba62378d8_papermill.cwl
step_3:
in:
input_1: input_13
input_10: input_14
input_11: input_15
input_12: input_16
input_2: input_17
input_3: input_18
input_4: input_19
input_5: input_20
input_6: input_21
input_7: input_22
input_8: input_23
input_9: input_24
out:
- output_0
run: e0c6511bd8234efe8a19405f1145e990_papermill.cwl
step_4:
in:
input_1: input_25
input_2: input_26
input_3: input_27
input_4: input_28
input_5: input_29
input_6: input_30
input_7: input_31
input_8: input_32
out:
- output_0
run: 66502cc19ea049fcb7695c2f8b34d0f9_papermill.cwl
step_5:
in:
input_10: input_33
input_11: input_34
input_2: input_35
input_3: input_36
input_4: input_37
input_5: input_38
input_6: input_39
input_7: input_40
input_8: input_41
input_9: input_42
out:
- output_0
run: edeae7a3f9bd41579941a5f9b0eaf2aa_papermill.cwl
step_6:
in:
input_1: input_43
input_2: input_44
input_3: input_45
input_4: input_46
input_5: input_47
input_6: input_48
out:
- output_0
run: 028dbdc86c70488ca752b1f18b3c620c_papermill.cwl
step_7:
in:
input_1: input_49
input_10: input_50
input_2: input_51
input_3: input_52
input_4: input_53
input_5: input_54
input_6: input_55
input_7: input_56
input_8: input_57
input_9: input_58
out:
- output_1
- output_0
run: d03bdcf1bad440d7ad5010cd182358d1_papermill.cwl
.renku/workflow/fd50c3fa788d40218ca176d4c3bc90c1_migrated.yaml 0 → 100644
+ 11151
− 0
View file @ 9155c073
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