-
CR (covid cron) authored378f9004
4cd3481674d6469c84431a2cae839e41.cwl 2.55 KiB
class: Workflow
cwlVersion: v1.0
hints: []
inputs:
input_1:
default: out_folder
streamable: false
type: string
input_2:
default: data/covidtracking
streamable: false
type: string
input_3:
default:
class: File
path: ../../notebooks/process/download-covidtracking-data.ipynb
streamable: false
type: File
input_4:
default: runs/download-covidtracking-data.runs.ipynb
streamable: false
type: string
input_5:
default: states-metadata.json
streamable: false
type: string
input_6:
default: states-daily.json
streamable: false
type: string
outputs:
output_0:
outputSource: step_1/output_1
streamable: false
type: Directory
output_3:
outputSource: step_1/output_0
streamable: false
type: File
requirements: []
steps:
step_1:
in:
input_1: input_1
input_2: input_2
input_3: input_3
input_4: input_4
out:
- output_1
- output_0
run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
step_2:
in:
filename: input_5
input_directory: step_1/output_1
out:
- output_file
run:
arguments: []
baseCommand:
- 'true'
class: CommandLineTool
cwlVersion: v1.0
hints: []
inputs:
filename:
default: states-metadata.json
streamable: false
type: string
input_directory:
streamable: false
type: Directory
outputs:
output_file:
outputBinding:
glob: $(inputs.filename)
streamable: false
type: File
permanentFailCodes: []
requirements:
- &id001
class: InlineJavascriptRequirement
- &id002
class: InitialWorkDirRequirement
listing: $(inputs.input_directory.listing)
successCodes: []
temporaryFailCodes: []
step_3:
in:
filename: input_6
input_directory: step_1/output_1
out:
- output_file
run:
arguments: []
baseCommand:
- 'true'
class: CommandLineTool
cwlVersion: v1.0
hints: []
inputs:
filename:
default: states-daily.json
streamable: false
type: string
input_directory:
streamable: false
type: Directory
outputs:
output_file:
outputBinding:
glob: $(inputs.filename)
streamable: false
type: File
permanentFailCodes: []
requirements:
- *id001
- *id002
successCodes: []
temporaryFailCodes: []