73781f74e51d4e54bc522007a2030ec2_papermill.cwl

arguments: []
baseCommand:
- papermill
class: CommandLineTool
cwlVersion: v1.0
hints: []
inputs:
  input_1:
    default: ts_folder
    inputBinding:
      position: 1
      prefix: -p
      separate: true
      shellQuote: true
    streamable: false
    type: string
  input_2:
    default:
      class: Directory
      listing: []
      path: ../../data/covid-19_jhu-csse
    inputBinding:
      position: 2
      separate: true
      shellQuote: true
    streamable: false
    type: Directory
  input_3:
    default: worldmap_path
    inputBinding:
      position: 3
      prefix: -p
      separate: true
      shellQuote: true
    streamable: false
    type: string
  input_4:
    default:
      class: File
      path: ../../data/worldmap/country_centroids.csv
    inputBinding:
      position: 4
      separate: true
      shellQuote: true
    streamable: false
    type: File
  input_5:
    default: out_folder
    inputBinding:
      position: 5
      prefix: -p
      separate: true
      shellQuote: true
    streamable: false
    type: string
  input_6:
    default: data/geodata
    inputBinding:
      position: 6
      separate: true
      shellQuote: true
    streamable: false
    type: string
  input_7:
    default:
      class: File
      path: ../../notebooks/CompileGeoData.ipynb
    inputBinding:
      position: 7
      prefix: --inject-paths
      separate: true
      shellQuote: true
    streamable: false
    type: File
  input_8:
    default: runs/CompileGeoData.run.ipynb
    inputBinding:
      position: 8
      separate: true
      shellQuote: true
    streamable: false
    type: string
outputs:
  output_0:
    outputBinding:
      glob: $(inputs.input_8)
    streamable: false
    type: File
  output_1:
    outputBinding:
      glob: $(inputs.input_6)
    streamable: false
    type: Directory
permanentFailCodes: []
requirements:
- class: InlineJavascriptRequirement
- class: InitialWorkDirRequirement
  listing:
  - entry: '$({"listing": [], "class": "Directory"})'
    entryname: runs
    writable: true
  - entry: '$({"listing": [], "class": "Directory"})'
    entryname: data/geodata
    writable: true
  - entry: $(inputs.input_2)
    entryname: data/covid-19_jhu-csse
    writable: false
  - entry: $(inputs.input_4)
    entryname: data/worldmap/country_centroids.csv
    writable: false
  - entry: $(inputs.input_7)
    entryname: notebooks/CompileGeoData.ipynb
    writable: false
successCodes: []
temporaryFailCodes: []