renku run papermill notebooks/examples/openzh-covid-19-example.ipynb...

renku run papermill notebooks/examples/openzh-covid-19-example.ipynb runs/openzh-covid-19-example.run.ipynb -p save_figures True -p data_path data/openzh-covid-19/ -p figures_path figures/

.gitattributes

@@ -240,4 +240,5 @@ data/covid-19-italy/dati-regioni-description.json filter=lfs diff=lfs merge=lfs
 data/covid-19-italy/dati-andamento-nazionale-description.json filter=lfs diff=lfs merge=lfs -text
 data/openzh-covid-19/COVID19_Fallzahlen_Kanton_SO_total.csv filter=lfs diff=lfs merge=lfs -text
 data/ch-population-statistics/ch-population-by-age-canton.xls filter=lfs diff=lfs merge=lfs -text
+figures/** filter=lfs diff=lfs merge=lfs -text
 figures/** !text !filter !merge !diff

.renku/workflow/c46d72f47c3f4c05bc93dc7d98ccd52f_papermill.cwl

+arguments: []
+baseCommand:
+- papermill
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../notebooks/examples/openzh-covid-19-example.ipynb
+    inputBinding:
+      position: 1
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_2:
+    default: runs/openzh-covid-19-example.run.ipynb
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_3:
+    default: save_figures
+    inputBinding:
+      position: 3
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_4:
+    default: 'True'
+    inputBinding:
+      position: 4
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_5:
+    default: data_path
+    inputBinding:
+      position: 5
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_6:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/openzh-covid-19
+    inputBinding:
+      position: 6
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: Directory
+  input_7:
+    default: figures_path
+    inputBinding:
+      position: 7
+      prefix: -p
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+  input_8:
+    default: figures
+    inputBinding:
+      position: 8
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_2)
+    streamable: false
+    type: File
+  output_1:
+    outputBinding:
+      glob: $(inputs.input_8)
+    streamable: false
+    type: Directory
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: runs
+    writable: true
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: figures
+    writable: true
+  - entry: $(inputs.input_1)
+    entryname: notebooks/examples/openzh-covid-19-example.ipynb
+    writable: false
+  - entry: $(inputs.input_6)
+    entryname: data/openzh-covid-19
+    writable: false
+successCodes: []
+temporaryFailCodes: []