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# see https://github.com/SwissDataScienceCenter/renkulab-docker
# to swap this image for the latest version available
# Uncomment and adapt if code is to be included in the image
# COPY src /code/src
# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
# except for the last end with backslash '\' to continue the RUN line
USER root
RUN apt-get update && \
apt-get install -y --no-install-recommends \
# install the python dependencies
COPY requirements.txt environment.yml /tmp/
RUN conda env update -q -f /tmp/environment.yml && \
/opt/conda/bin/pip install -r /tmp/requirements.txt && \
conda clean -y --all && \
conda env export -n "root"
# Tensorboard extension
RUN jupyter labextension install jupyterlab_tensorboard && \