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LICENSE
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MIT License GPL License
Copyright (c) 2021 pawel rosikiewicz Copyright (c) 2021 Pawel Rosikiewicz
Permission is hereby granted, free of charge, to any person obtaining a copy This program is free software: you can redistribute it and/or modify
of this software and associated documentation files (the "Software"), to deal it under the terms of the GNU General Public License as published by
in the Software without restriction, including without limitation the rights the Free Software Foundation, either version 3 of the License, or
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell (at your option) any later version.
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all This program is distributed in the hope that it will be useful,
copies or substantial portions of the Software. but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR You should have received a copy of the GNU General Public License
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, along with this program. If not, see <http://www.gnu.org/licenses/>.
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE \ No newline at end of file
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
README.md
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# AMLD 2021 Workshop # AMLD 2021 Workshop
Practical part for AMLD 2021 Workshop based on the original work of Pawel Rosikiewicz available at Github: https://github.com/PawelRosikiewicz/SkinDiagnosticAI Practical part for AMLD 2021 Workshop based on the original work of Pawel Rosikiewicz available at [Github](https://github.com/PawelRosikiewicz/SkinDiagnosticAI).
![skindiagnosticai title image](images/skindiagnosticai_title_image.png) ![skindiagnosticai title image](images/skindiagnosticai_title_image.png)
...@@ -8,8 +8,7 @@ Practical part for AMLD 2021 Workshop based on the original work of Pawel Rosiki ...@@ -8,8 +8,7 @@ Practical part for AMLD 2021 Workshop based on the original work of Pawel Rosiki
### Comparison of 5000 AI methods for cancer detection and classyfication on dermatoscopic images from Harvard HAM10000 dataset using FastClassAI workbench ### Comparison of 5000 AI methods for cancer detection and classyfication on dermatoscopic images from Harvard HAM10000 dataset using FastClassAI workbench
Author: Pawel Rosikiewicz, Founder, and Team Leader at SwissAI Author: Pawel Rosikiewicz, Founder, and Team Leader at SwissAI
License: MIT
The goal is to quickly test and optimize large number of ml and deep learning models and dataset preprocessing procedures, that are integrated in one python enviroment with FastClassAI workebench. The goal is to quickly test and optimize large number of ml and deep learning models and dataset preprocessing procedures, that are integrated in one python enviroment with FastClassAI workebench.
Main Goals are: Main Goals are:
......
data/interim/ham10000__cancer_detection_and_classification__extracted_features/BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_logfile.csv 0 → 100644
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batch_size,created_dt,datasetname,img_batch_features_filename,img_batch_info_filename,module_name,module_source
744,2021-02-11 10:21:10.982713,train_05,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_05_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_05_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
742,2021-02-11 10:23:40.609939,train_02,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_02_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_02_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
740,2021-02-11 10:25:58.727174,valid_01,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_valid_01_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_valid_01_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
742,2021-02-11 10:28:20.782967,train_03,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_03_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_03_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
744,2021-02-11 10:30:45.976417,train_04,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_04_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_04_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
367,2021-02-11 10:31:54.910890,test_01,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_01_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_01_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
742,2021-02-11 10:34:18.699225,train_01,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_01_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_01_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
738,2021-02-11 10:36:37.716441,train_06,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_06_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_06_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
741,2021-02-11 10:38:58.823356,valid_02,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_valid_02_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_valid_02_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
751,2021-02-11 10:41:15.462112,train_07,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_07_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_train_07_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
367,2021-02-11 10:42:24.065582,test_02,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_02_encoded.npy,BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_02_labels.csv,BiT_M_Resnet101,/Users/pawel/Desktop/Activities/100__Projects/SkinAnaliticAI/models/bit_m-r101x1_1
data/interim/ham10000__cancer_detection_and_classification__extracted_features/BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_01_labels.csv 0 → 100644
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data/interim/ham10000__cancer_detection_and_classification__extracted_features/BiT_M_Resnet101_HAM10000__Cancer_Detection_And_Classification_test_02_labels.csv 0 → 100644
View file @ e572ed01
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Melanocytic_nevus,ISIC_0030888.jpg,raw,0
Melanocytic_nevus,ISIC_0030940.jpg,raw,0
Melanocytic_nevus,ISIC_0030969.jpg,raw,0
Melanocytic_nevus,ISIC_0030980.jpg,raw,0
Melanocytic_nevus,ISIC_0031010.jpg,raw,0
Melanocytic_nevus,ISIC_0031072.jpg,raw,0
Melanocytic_nevus,ISIC_0031075.jpg,raw,0
Melanocytic_nevus,ISIC_0031099.jpg,raw,0
Melanocytic_nevus,ISIC_0031129.jpg,raw,0
Melanocytic_nevus,ISIC_0031152.jpg,raw,0
Melanocytic_nevus,ISIC_0031210.jpg,raw,0
Melanocytic_nevus,ISIC_0031213.jpg,raw,0
Melanocytic_nevus,ISIC_0031246.jpg,raw,0
Melanocytic_nevus,ISIC_0031343.jpg,raw,0
Melanocytic_nevus,ISIC_0031347.jpg,raw,0
Melanocytic_nevus,ISIC_0031375.jpg,raw,0
Melanocytic_nevus,ISIC_0031379.jpg,raw,0
Melanocytic_nevus,ISIC_0031415.jpg,raw,0
Melanocytic_nevus,ISIC_0031446.jpg,raw,0
Melanocytic_nevus,ISIC_0031458.jpg,raw,0
Melanocytic_nevus,ISIC_0031611.jpg,raw,0
Melanocytic_nevus,ISIC_0031621.jpg,raw,0
Melanocytic_nevus,ISIC_0031625.jpg,raw,0
Melanocytic_nevus,ISIC_0031635.jpg,raw,0
Melanocytic_nevus,ISIC_0031663.jpg,raw,0
Melanocytic_nevus,ISIC_0031704.jpg,raw,0
Melanocytic_nevus,ISIC_0031705.jpg,raw,0
Melanocytic_nevus,ISIC_0031708.jpg,raw,0
Melanocytic_nevus,ISIC_0031750.jpg,raw,0
Melanocytic_nevus,ISIC_0031768.jpg,raw,0
Melanocytic_nevus,ISIC_0031802.jpg,raw,0
Melanocytic_nevus,ISIC_0031805.jpg,raw,0
Melanocytic_nevus,ISIC_0031892.jpg,raw,0
Melanocytic_nevus,ISIC_0031928.jpg,raw,0
Melanocytic_nevus,ISIC_0031942.jpg,raw,0
Melanocytic_nevus,ISIC_0031979.jpg,raw,0
Melanocytic_nevus,ISIC_0032025.jpg,raw,0
Melanocytic_nevus,ISIC_0032085.jpg,raw,0
Melanocytic_nevus,ISIC_0032091.jpg,raw,0
Melanocytic_nevus,ISIC_0032119.jpg,raw,0
Melanocytic_nevus,ISIC_0032137.jpg,raw,0
Melanocytic_nevus,ISIC_0032148.jpg,raw,0
Melanocytic_nevus,ISIC_0032165.jpg,raw,0
Melanocytic_nevus,ISIC_0032177.jpg,raw,0
Melanocytic_nevus,ISIC_0032202.jpg,raw,0
Melanocytic_nevus,ISIC_0032216.jpg,raw,0
Melanocytic_nevus,ISIC_0032226.jpg,raw,0
Melanocytic_nevus,ISIC_0032236.jpg,raw,0
Melanocytic_nevus,ISIC_0032281.jpg,raw,0
Melanocytic_nevus,ISIC_0032360.jpg,raw,0
Melanocytic_nevus,ISIC_0032392.jpg,raw,0
Melanocytic_nevus,ISIC_0032402.jpg,raw,0
Melanocytic_nevus,ISIC_0032413.jpg,raw,0
Melanocytic_nevus,ISIC_0032418.jpg,raw,0
Melanocytic_nevus,ISIC_0032426.jpg,raw,0
Melanocytic_nevus,ISIC_0032438.jpg,raw,0
Melanocytic_nevus,ISIC_0032453.jpg,raw,0
Melanocytic_nevus,ISIC_0032467.jpg,raw,0
Melanocytic_nevus,ISIC_0032478.jpg,raw,0
Melanocytic_nevus,ISIC_0032499.jpg,raw,0
Melanocytic_nevus,ISIC_0032582.jpg,raw,0
Melanocytic_nevus,ISIC_0032691.jpg,raw,0
Melanocytic_nevus,ISIC_0032821.jpg,raw,0
Melanocytic_nevus,ISIC_0032837.jpg,raw,0
Melanocytic_nevus,ISIC_0032881.jpg,raw,0
Melanocytic_nevus,ISIC_0032910.jpg,raw,0
Melanocytic_nevus,ISIC_0032942.jpg,raw,0
Melanocytic_nevus,ISIC_0033039.jpg,raw,0
Melanocytic_nevus,ISIC_0033096.jpg,raw,0
Melanocytic_nevus,ISIC_0033243.jpg,raw,0
Melanocytic_nevus,ISIC_0033364.jpg,raw,0
Melanocytic_nevus,ISIC_0033585.jpg,raw,0
Melanocytic_nevus,ISIC_0033688.jpg,raw,0
Melanocytic_nevus,ISIC_0033792.jpg,raw,0
Melanocytic_nevus,ISIC_0033845.jpg,raw,0
Melanocytic_nevus,ISIC_0034146.jpg,raw,0
Melanocytic_nevus,ISIC_0034220.jpg,raw,0
Melanocytic_nevus,ISIC_0034244.jpg,raw,0
Melanocytic_nevus,ISIC_0034282.jpg,raw,0
Melanoma,ISIC_0024571.jpg,raw,0
Melanoma,ISIC_0025238.jpg,raw,0
Melanoma,ISIC_0025324.jpg,raw,0
Melanoma,ISIC_0025531.jpg,raw,0
Melanoma,ISIC_0025800.jpg,raw,0
Melanoma,ISIC_0026596.jpg,raw,0
Melanoma,ISIC_0027163.jpg,raw,0
Melanoma,ISIC_0027282.jpg,raw,0
Melanoma,ISIC_0027793.jpg,raw,0
Melanoma,ISIC_0028173.jpg,raw,0
Melanoma,ISIC_0028465.jpg,raw,0
Melanoma,ISIC_0028548.jpg,raw,0
Melanoma,ISIC_0028930.jpg,raw,0
Melanoma,ISIC_0029513.jpg,raw,0
Melanoma,ISIC_0030824.jpg,raw,0
Melanoma,ISIC_0031517.jpg,raw,0
Melanoma,ISIC_0031529.jpg,raw,0
Melanoma,ISIC_0032400.jpg,raw,0
Melanoma,ISIC_0032604.jpg,raw,0
Melanoma,ISIC_0032684.jpg,raw,0
Melanoma,ISIC_0032875.jpg,raw,0
Melanoma,ISIC_0032892.jpg,raw,0
Melanoma,ISIC_0032985.jpg,raw,0
Melanoma,ISIC_0033023.jpg,raw,0
Melanoma,ISIC_0033166.jpg,raw,0
Melanoma,ISIC_0033299.jpg,raw,0
Melanoma,ISIC_0033546.jpg,raw,0
Melanoma,ISIC_0033911.jpg,raw,0
Melanoma,ISIC_0033942.jpg,raw,0
Melanoma,ISIC_0033975.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0025803.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0026132.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0026626.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0026702.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0026927.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0027708.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0028335.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0029541.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0031672.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0032277.jpg,raw,0
Squamous_cell_carcinoma,ISIC_0032455.jpg,raw,0
Vascular_skin_lesions,ISIC_0025249.jpg,raw,0
Vascular_skin_lesions,ISIC_0025677.jpg,raw,0
Vascular_skin_lesions,ISIC_0027790.jpg,raw,0
Vascular_skin_lesions,ISIC_0031065.jpg,raw,0

This GitLab is a part of renkulab.io