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Resolve several minor TODOs in the codebase

Alessandro Maissen requested to merge 119-resolve-several-small-issues-part-1 into master

This MR resolves some small issues in the code, including

  • More documentation for DataObjects
  • Warnings when DataOrdinal or DataMatrix is used. It also excused these two from the documentation
  • Renaming ConAEModel.datapath to ConAEModel.save_dir

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