From fd85c6c0d1d4588440aa3b18cfbb021be979c01e Mon Sep 17 00:00:00 2001 From: Lilian Gasser <gasserli@ethz.ch> Date: Thu, 28 Feb 2019 15:21:58 +0100 Subject: [PATCH] renku run --isolation --output data/AB/1960/05_annotatedxml.tar.gz python src/python/run_extract_discussions.py data/politicians/yearly_pickles/1960_MPs.pickle data/AB/1960/04_correctedxml.tar.gz data/AB/1960/03_correctedmeta.tar.gz data/lists/not_names.txt data/lists/dict_overlaps.pickle data/AB/1960/05_annotatedxml.tar.gz --- .gitattributes | 1 + ...a5b19526cf34359ba2011d0456430c5_python.cwl | 91 +++++++++++++++++++ data/AB/1960/05_annotatedxml.tar.gz | 3 + 3 files changed, 95 insertions(+) create mode 100644 .renku/workflow/da5b19526cf34359ba2011d0456430c5_python.cwl create mode 100644 data/AB/1960/05_annotatedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 2f3626ca..30ff59e1 100644 --- a/.gitattributes +++ b/.gitattributes @@ -433,3 +433,4 @@ data/AB/1956/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1957/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1958/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1959/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1960/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/da5b19526cf34359ba2011d0456430c5_python.cwl b/.renku/workflow/da5b19526cf34359ba2011d0456430c5_python.cwl new file mode 100644 index 00000000..ae267156 --- /dev/null +++ b/.renku/workflow/da5b19526cf34359ba2011d0456430c5_python.cwl @@ -0,0 +1,91 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_discussions.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/politicians/yearly_pickles/1960_MPs.pickle + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1960/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: + class: File + path: ../../data/AB/1960/03_correctedmeta.tar.gz + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: File + input_5: + default: + class: File + path: ../../data/lists/not_names.txt + inputBinding: + position: 5 + separate: true + shellQuote: true + streamable: false + type: File + input_6: + default: + class: File + path: ../../data/lists/dict_overlaps.pickle + inputBinding: + position: 6 + separate: true + shellQuote: true + streamable: false + type: File + input_7: + default: data/AB/1960/05_annotatedxml.tar.gz + inputBinding: + position: 7 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_7) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1960 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1960/05_annotatedxml.tar.gz b/data/AB/1960/05_annotatedxml.tar.gz new file mode 100644 index 00000000..1c469b20 --- /dev/null +++ b/data/AB/1960/05_annotatedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f694fb714e111d80b34b93a4bde75e5d18d4138dab118210e836f4045e0331d5 +size 11190289 -- GitLab