From ef43b5a64a7ed54a4b9fe22859a44b046889d8d4 Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Mon, 21 Jan 2019 11:00:51 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1945/01_rawmeta.tar.gz data/AB//1945/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...b50531154e448fdbdea58a885dc8bab_python.cwl | 51 +++++++++++++++++++ data/AB/1945/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/db50531154e448fdbdea58a885dc8bab_python.cwl create mode 100644 data/AB/1945/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index 7ee57401..556ed7a2 100644 --- a/.gitattributes +++ b/.gitattributes @@ -188,3 +188,4 @@ data/AB/1941/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1942/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1943/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1944/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1945/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/db50531154e448fdbdea58a885dc8bab_python.cwl b/.renku/workflow/db50531154e448fdbdea58a885dc8bab_python.cwl new file mode 100644 index 00000000..20c72a25 --- /dev/null +++ b/.renku/workflow/db50531154e448fdbdea58a885dc8bab_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1945/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1945/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1945 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1945/03_correctedmeta.tar.gz b/data/AB/1945/03_correctedmeta.tar.gz new file mode 100644 index 00000000..774645fd --- /dev/null +++ b/data/AB/1945/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe9c05b58105abf0ad38ef52b37c458cd2a60eba3a3dcdc06dbed5eeddd9d971 +size 276480 -- GitLab