From e3dfdd22456c23d172601102030858be510c25d4 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Tue, 4 Dec 2018 06:48:10 +0000 Subject: [PATCH] renku run python ./src/python/run_extract_origxml.py data/AB//1943/00_rawpdfs.tar.gz data/AB//1943/02_extractedxml.tar.gz --- .gitattributes | 1 + ...41deba716cc486f8b1d0da20b497541_python.cwl | 51 +++++++++++++++++++ data/AB/1943/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/941deba716cc486f8b1d0da20b497541_python.cwl create mode 100644 data/AB/1943/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 25a2d15a..7d471e99 100644 --- a/.gitattributes +++ b/.gitattributes @@ -88,3 +88,4 @@ data/AB/1939/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1940/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1941/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1942/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1943/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/941deba716cc486f8b1d0da20b497541_python.cwl b/.renku/workflow/941deba716cc486f8b1d0da20b497541_python.cwl new file mode 100644 index 00000000..b0f854cb --- /dev/null +++ b/.renku/workflow/941deba716cc486f8b1d0da20b497541_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1943/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1943/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1943 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1943/02_extractedxml.tar.gz b/data/AB/1943/02_extractedxml.tar.gz new file mode 100644 index 00000000..b0d2f294 --- /dev/null +++ b/data/AB/1943/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a8af9dfcaf17d310bf233359631d41e608a418bcb94de21c43da881a45a0f50 +size 55633580 -- GitLab