From e369f5fc71cce92fa47650e270593eb60330b54f Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Mon, 21 Jan 2019 10:55:34 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1940/01_rawmeta.tar.gz data/AB//1940/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...882b984276740598d280b1952e8131f_python.cwl | 51 +++++++++++++++++++ data/AB/1940/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/e882b984276740598d280b1952e8131f_python.cwl create mode 100644 data/AB/1940/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index ce2b2d22..336d320d 100644 --- a/.gitattributes +++ b/.gitattributes @@ -183,3 +183,4 @@ data/AB/1936/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1937/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1938/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1939/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1940/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/e882b984276740598d280b1952e8131f_python.cwl b/.renku/workflow/e882b984276740598d280b1952e8131f_python.cwl new file mode 100644 index 00000000..96638430 --- /dev/null +++ b/.renku/workflow/e882b984276740598d280b1952e8131f_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1940/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1940/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1940 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1940/03_correctedmeta.tar.gz b/data/AB/1940/03_correctedmeta.tar.gz new file mode 100644 index 00000000..6c6f8dcf --- /dev/null +++ b/data/AB/1940/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a002ffd796bfdd8d12b4036043ad4969719ba2e9e452afe869babad4a2d7ea7d +size 225280 -- GitLab