From d7ef8f9624d561e72024dca9c2577fb9f50a83ba Mon Sep 17 00:00:00 2001
From: Lilian Gasser <gasserli@ethz.ch>
Date: Thu, 28 Feb 2019 14:25:39 +0100
Subject: [PATCH] renku run --isolation --output
data/AB/1940/06_collectedinformation.pickle python
src/python/run_collect_information.py data/AB/1940/05_annotatedxml.tar.gz
data/AB/1940/03_correctedmeta.tar.gz
data/AB/1940/06_collectedinformation.pickle
---
.gitattributes | 1 +
...523ffea8f334861b3aaed2c34d5b095_python.cwl | 61 +++++++++++++++++++
data/AB/1940/06_collectedinformation.pickle | 3 +
3 files changed, 65 insertions(+)
create mode 100644 .renku/workflow/7523ffea8f334861b3aaed2c34d5b095_python.cwl
create mode 100644 data/AB/1940/06_collectedinformation.pickle
diff --git a/.gitattributes b/.gitattributes
index 924079db..8f1cc6bb 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -413,3 +413,4 @@ data/AB/1936/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1937/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1938/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1939/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
+data/AB/1940/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/7523ffea8f334861b3aaed2c34d5b095_python.cwl b/.renku/workflow/7523ffea8f334861b3aaed2c34d5b095_python.cwl
new file mode 100644
index 00000000..56cdcb58
--- /dev/null
+++ b/.renku/workflow/7523ffea8f334861b3aaed2c34d5b095_python.cwl
@@ -0,0 +1,61 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_collect_information.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1940/05_annotatedxml.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default:
+ class: File
+ path: ../../data/AB/1940/03_correctedmeta.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_4:
+ default: data/AB/1940/06_collectedinformation.pickle
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_4)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1940
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1940/06_collectedinformation.pickle b/data/AB/1940/06_collectedinformation.pickle
new file mode 100644
index 00000000..fc089843
--- /dev/null
+++ b/data/AB/1940/06_collectedinformation.pickle
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3af77f0b5adee3b21892d95d57103d81211868152f8b4bfad9d441d5fbc46359
+size 6994613
--
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