From d25d1d6a9e1c02fdd2fd598f81ebd95b969ce9ad Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Tue, 12 Feb 2019 20:50:07 +0000
Subject: [PATCH] renku run --isolation python
src/python/run_extract_origxml.py data/AB//1987/00_rawpdfs.tar.gz
data/AB//1987/02_extractedxml.tar.gz
---
.gitattributes | 1 +
...5595d32ea924b4bbcff8c22fc7930f3_python.cwl | 51 +++++++++++++++++++
data/AB/1987/02_extractedxml.tar.gz | 3 ++
3 files changed, 55 insertions(+)
create mode 100644 .renku/workflow/f5595d32ea924b4bbcff8c22fc7930f3_python.cwl
create mode 100644 data/AB/1987/02_extractedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index 60b77b54..01704460 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -342,3 +342,4 @@ data/AB/1950/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1976/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1977/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1975/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1987/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/f5595d32ea924b4bbcff8c22fc7930f3_python.cwl b/.renku/workflow/f5595d32ea924b4bbcff8c22fc7930f3_python.cwl
new file mode 100644
index 00000000..9160fa39
--- /dev/null
+++ b/.renku/workflow/f5595d32ea924b4bbcff8c22fc7930f3_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_origxml.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1987/00_rawpdfs.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default: data/AB/1987/02_extractedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_3)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1987
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1987/02_extractedxml.tar.gz b/data/AB/1987/02_extractedxml.tar.gz
new file mode 100644
index 00000000..75cfeac4
--- /dev/null
+++ b/data/AB/1987/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:66cbbdc25e59ec016a7b87caaa4e91ba8ebd92bff8a99834049cec1bb69cfa19
+size 301217062
--
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