diff --git a/.gitattributes b/.gitattributes index ba120b13fb58d479978053072c85913d03597b7b..a9164cfdd4ec6a21be772bfcfd0602a3d9f2ddec 100644 --- a/.gitattributes +++ b/.gitattributes @@ -374,3 +374,4 @@ data/AB/1897/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1898/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1899/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1900/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1901/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/6d83bbf68c4a45e2a05effe5c8fc010e_python.cwl b/.renku/workflow/6d83bbf68c4a45e2a05effe5c8fc010e_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..c5495af4399c299776f0d2a4b33e21a60e19cc4b --- /dev/null +++ b/.renku/workflow/6d83bbf68c4a45e2a05effe5c8fc010e_python.cwl @@ -0,0 +1,61 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_collect_information.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1901/05_annotatedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1901/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: data/AB/1901/06_collectedinformation.pickle + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_4) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1901 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1901/06_collectedinformation.pickle b/data/AB/1901/06_collectedinformation.pickle new file mode 100644 index 0000000000000000000000000000000000000000..148351b94b3d129a67b97782dbf554299f2f95ca --- /dev/null +++ b/data/AB/1901/06_collectedinformation.pickle @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:59ec62dce1d66944d50f5168c4220d04377bff9bcb69e3bf0a8e4719691e0733 +size 3862698