diff --git a/.gitattributes b/.gitattributes index d17ffd8a182a913ad1ee586271f13b7885bf7aef..a3daf6de3e23f17b461de5e27eff60b1fa658567 100644 --- a/.gitattributes +++ b/.gitattributes @@ -381,3 +381,4 @@ data/AB/1904/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1905/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1906/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1907/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1908/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/7438e72c8afe4d2f96d0899bb2d376b9_python.cwl b/.renku/workflow/7438e72c8afe4d2f96d0899bb2d376b9_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..8508c062eb0ec71d2c18d895992240d8067b8025 --- /dev/null +++ b/.renku/workflow/7438e72c8afe4d2f96d0899bb2d376b9_python.cwl @@ -0,0 +1,61 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_collect_information.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1908/05_annotatedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1908/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: data/AB/1908/06_collectedinformation.pickle + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_4) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1908 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1908/06_collectedinformation.pickle b/data/AB/1908/06_collectedinformation.pickle new file mode 100644 index 0000000000000000000000000000000000000000..e99cbb346f5dcbc0ed2013fab6c66e78230697d8 --- /dev/null +++ b/data/AB/1908/06_collectedinformation.pickle @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b69036cf285a623fcd0a8d1b0d23a472f3ec0b165d595e64dc9f6609640b5913 +size 5566170