From c6e0caf57324a9cdb9fd54c7da9a073f720350ae Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Tue, 22 Jan 2019 19:12:01 +0000 Subject: [PATCH] renku run python src/python/run_correctxml.py data/AB//1973/02_extractedxml.tar.gz data/AB//1973/04_correctedxml.tar.gz --- .gitattributes | 1 + ...37b046f45a64dec9c810ea6e51ecaad_python.cwl | 51 +++++++++++++++++++ data/AB/1973/04_correctedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/337b046f45a64dec9c810ea6e51ecaad_python.cwl create mode 100644 data/AB/1973/04_correctedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 4c468c19..11b3ac3e 100644 --- a/.gitattributes +++ b/.gitattributes @@ -240,3 +240,4 @@ data/AB/1992/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1993/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1994/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1995/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1973/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/337b046f45a64dec9c810ea6e51ecaad_python.cwl b/.renku/workflow/337b046f45a64dec9c810ea6e51ecaad_python.cwl new file mode 100644 index 00000000..8f8df800 --- /dev/null +++ b/.renku/workflow/337b046f45a64dec9c810ea6e51ecaad_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correctxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1973/02_extractedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1973/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1973 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1973/04_correctedxml.tar.gz b/data/AB/1973/04_correctedxml.tar.gz new file mode 100644 index 00000000..328b4066 --- /dev/null +++ b/data/AB/1973/04_correctedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7d4a6ad272fc8e6015fb2da4f16a7f4363d7d835427cf9c4777294f982424e6b +size 20865709 -- GitLab