diff --git a/.gitattributes b/.gitattributes index 14ed1de521a6f7f58248c6f4349fc28c69d23534..a4914cdc4dce479729358387ade2aab61a3ecff1 100644 --- a/.gitattributes +++ b/.gitattributes @@ -376,3 +376,4 @@ data/AB/1899/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1900/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1901/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1902/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1903/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/71169426f08c4d2e8e5b4614e37e1757_python.cwl b/.renku/workflow/71169426f08c4d2e8e5b4614e37e1757_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..16a14a9bcedda090b95d5518dab4a6998fde0fe8 --- /dev/null +++ b/.renku/workflow/71169426f08c4d2e8e5b4614e37e1757_python.cwl @@ -0,0 +1,61 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_collect_information.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1903/05_annotatedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1903/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: data/AB/1903/06_collectedinformation.pickle + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_4) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1903 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1903/06_collectedinformation.pickle b/data/AB/1903/06_collectedinformation.pickle new file mode 100644 index 0000000000000000000000000000000000000000..4a66036e245813d397fa21ce11eb83a1b5e5376c --- /dev/null +++ b/data/AB/1903/06_collectedinformation.pickle @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00be53f40119d70765b2a7808934f4f24eeabe26476a7ac7a458d9bb4120cc94 +size 4839789