From c1235b470a664a2d6a66ef42e2e3e0cc886191f9 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Fri, 30 Nov 2018 23:04:41 +0000 Subject: [PATCH] renku run python src/python/run_extract_origxml.py data/AB//1919/00_rawpdfs.tar.gz data/AB//1919/02_extractedxml.tar.gz --- .gitattributes | 1 + ...2579b6c928c49709680074ba1bff299_python.cwl | 51 +++++++++++++++++++ data/AB/1919/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl create mode 100644 data/AB/1919/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 6d46848b..75b1ae62 100644 --- a/.gitattributes +++ b/.gitattributes @@ -30,3 +30,4 @@ data/AB/1915/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1916/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1917/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1918/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1919/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl b/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl new file mode 100644 index 00000000..c5415aa1 --- /dev/null +++ b/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1919/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1919/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1919 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1919/02_extractedxml.tar.gz b/data/AB/1919/02_extractedxml.tar.gz new file mode 100644 index 00000000..67a61abe --- /dev/null +++ b/data/AB/1919/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:04c4981a14d7981dde0ab8c116c43bf92b99386872224049c8ee7d5f2a163d1a +size 145566318 -- GitLab