From c07c40af20f682c1ba0435ec5edd93ffbd143c18 Mon Sep 17 00:00:00 2001 From: Lilian Gasser <gasserli@ethz.ch> Date: Thu, 28 Feb 2019 10:17:31 +0100 Subject: [PATCH] renku run --isolation --output data/AB/1916/05_annotatedxml.tar.gz python src/python/run_extract_discussions.py data/politicians/yearly_pickles/1916_MPs.pickle data/AB/1916/04_correctedxml.tar.gz data/AB/1916/03_correctedmeta.tar.gz data/lists/not_names.txt data/lists/dict_overlaps.pickle data/AB/1916/05_annotatedxml.tar.gz --- ...59ef0758d3c4501ae37df0fbeafeaa0_python.cwl | 91 +++++++++++++++++++ data/AB/1916/05_annotatedxml.tar.gz | 3 + 2 files changed, 94 insertions(+) create mode 100644 .renku/workflow/959ef0758d3c4501ae37df0fbeafeaa0_python.cwl create mode 100644 data/AB/1916/05_annotatedxml.tar.gz diff --git a/.renku/workflow/959ef0758d3c4501ae37df0fbeafeaa0_python.cwl b/.renku/workflow/959ef0758d3c4501ae37df0fbeafeaa0_python.cwl new file mode 100644 index 00000000..15e49a86 --- /dev/null +++ b/.renku/workflow/959ef0758d3c4501ae37df0fbeafeaa0_python.cwl @@ -0,0 +1,91 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_discussions.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/politicians/yearly_pickles/1916_MPs.pickle + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1916/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: + class: File + path: ../../data/AB/1916/03_correctedmeta.tar.gz + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: File + input_5: + default: + class: File + path: ../../data/lists/not_names.txt + inputBinding: + position: 5 + separate: true + shellQuote: true + streamable: false + type: File + input_6: + default: + class: File + path: ../../data/lists/dict_overlaps.pickle + inputBinding: + position: 6 + separate: true + shellQuote: true + streamable: false + type: File + input_7: + default: data/AB/1916/05_annotatedxml.tar.gz + inputBinding: + position: 7 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_7) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1916 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1916/05_annotatedxml.tar.gz b/data/AB/1916/05_annotatedxml.tar.gz new file mode 100644 index 00000000..0af96b3e --- /dev/null +++ b/data/AB/1916/05_annotatedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:37c38c60e0fb9fa575a35927e9dceaf8722a207405a05c3c09f4da98a76cfb79 +size 3312392 -- GitLab