From bb1cb1219e0b17efe1c977e8a7ae6e41eaa08981 Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Mon, 21 Jan 2019 11:41:05 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1966/01_rawmeta.tar.gz data/AB//1966/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...147893d1b1e433fb5b15e399ddb8569_python.cwl | 51 +++++++++++++++++++ data/AB/1966/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/1147893d1b1e433fb5b15e399ddb8569_python.cwl create mode 100644 data/AB/1966/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index 2e861862..8e11c46a 100644 --- a/.gitattributes +++ b/.gitattributes @@ -209,3 +209,4 @@ data/AB/1962/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1963/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1964/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1965/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1966/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/1147893d1b1e433fb5b15e399ddb8569_python.cwl b/.renku/workflow/1147893d1b1e433fb5b15e399ddb8569_python.cwl new file mode 100644 index 00000000..71dca366 --- /dev/null +++ b/.renku/workflow/1147893d1b1e433fb5b15e399ddb8569_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1966/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1966/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1966 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1966/03_correctedmeta.tar.gz b/data/AB/1966/03_correctedmeta.tar.gz new file mode 100644 index 00000000..b4b61295 --- /dev/null +++ b/data/AB/1966/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e944435aec363aa475771f532226d72b695b439575eca9b49068cb70fdcbccc +size 399360 -- GitLab