From ac9060b14421dc8f73f0e9e67a5a2fee4dd1fef1 Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Fri, 30 Nov 2018 15:35:41 +0000
Subject: [PATCH] renku run python src/python/run_extract_origxml.py
data/AB//1898/00_rawpdfs.tar.gz data/AB//1898/02_extractedxml.tar.gz
---
.gitattributes | 1 +
...95b78dce28d46d49a9658bc3ad8fafe_python.cwl | 51 +++++++++++++++++++
data/AB/1898/02_extractedxml.tar.gz | 3 ++
3 files changed, 55 insertions(+)
create mode 100644 .renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl
create mode 100644 data/AB/1898/02_extractedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index 81a56ee1..a29c28c8 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -9,3 +9,4 @@ data/AB/1894/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1895/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1896/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1897/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1898/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl b/.renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl
new file mode 100644
index 00000000..c1d136f1
--- /dev/null
+++ b/.renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_origxml.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1898/00_rawpdfs.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default: data/AB/1898/02_extractedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_3)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1898
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1898/02_extractedxml.tar.gz b/data/AB/1898/02_extractedxml.tar.gz
new file mode 100644
index 00000000..9991b79f
--- /dev/null
+++ b/data/AB/1898/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:71b8968b4a795065115bebd8396a0c190d788686549bde474ebc71a3bfe96316
+size 36933004
--
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