From a7ecfd0b3cb98067a37f51a3f0b25b68e1613bea Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Fri, 30 Nov 2018 10:42:49 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1910/01_rawmeta.tar.gz data/AB//1910/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...ea5908347c24c08a9e9200935823cb0_python.cwl | 51 +++++++++++++++++++ data/AB/1910/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/cea5908347c24c08a9e9200935823cb0_python.cwl create mode 100644 data/AB/1910/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index 6eaf7ad6..2397b453 100644 --- a/.gitattributes +++ b/.gitattributes @@ -53,3 +53,4 @@ data/AB/1906/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1907/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1908/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1909/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1910/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/cea5908347c24c08a9e9200935823cb0_python.cwl b/.renku/workflow/cea5908347c24c08a9e9200935823cb0_python.cwl new file mode 100644 index 00000000..e983bfdc --- /dev/null +++ b/.renku/workflow/cea5908347c24c08a9e9200935823cb0_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1910/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1910/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1910 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1910/03_correctedmeta.tar.gz b/data/AB/1910/03_correctedmeta.tar.gz new file mode 100644 index 00000000..a4a5dcc5 --- /dev/null +++ b/data/AB/1910/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ce30e314006f6d2bcda73955ab2b0c7bc6a07aa001dd4d69468afb5d4465de5c +size 163840 -- GitLab