From a77d87ceec473a50f172c61b075520305cd2f162 Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Mon, 21 Jan 2019 13:43:20 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1980/01_rawmeta.tar.gz data/AB//1980/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...b665fc33f634e96a89c530b5c606974_python.cwl | 51 +++++++++++++++++++ data/AB/1980/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/1b665fc33f634e96a89c530b5c606974_python.cwl create mode 100644 data/AB/1980/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index e6d70afc..33c50d13 100644 --- a/.gitattributes +++ b/.gitattributes @@ -223,3 +223,4 @@ data/AB/1976/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1977/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1978/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1979/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1980/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/1b665fc33f634e96a89c530b5c606974_python.cwl b/.renku/workflow/1b665fc33f634e96a89c530b5c606974_python.cwl new file mode 100644 index 00000000..22619e70 --- /dev/null +++ b/.renku/workflow/1b665fc33f634e96a89c530b5c606974_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1980/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1980/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1980 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1980/03_correctedmeta.tar.gz b/data/AB/1980/03_correctedmeta.tar.gz new file mode 100644 index 00000000..150d5df8 --- /dev/null +++ b/data/AB/1980/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee0db96cd32d1a0e022b14b017156ee9c36a8fd43433f7b742e3f7ec82e5c826 +size 1423360 -- GitLab