From a54d4e625ef5e5a37d4c1457cdb44456de6cc673 Mon Sep 17 00:00:00 2001
From: Lilian Gasser <gasserli@ethz.ch>
Date: Thu, 28 Feb 2019 14:01:07 +0100
Subject: [PATCH] renku run --isolation --output
data/AB/1930/06_collectedinformation.pickle python
src/python/run_collect_information.py data/AB/1930/05_annotatedxml.tar.gz
data/AB/1930/03_correctedmeta.tar.gz
data/AB/1930/06_collectedinformation.pickle
---
.gitattributes | 1 +
...d405c757e074878b46adb93e0dbecd3_python.cwl | 61 +++++++++++++++++++
data/AB/1930/06_collectedinformation.pickle | 3 +
3 files changed, 65 insertions(+)
create mode 100644 .renku/workflow/4d405c757e074878b46adb93e0dbecd3_python.cwl
create mode 100644 data/AB/1930/06_collectedinformation.pickle
diff --git a/.gitattributes b/.gitattributes
index 5877df53..9b5d1ad8 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -403,3 +403,4 @@ data/AB/1926/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1927/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1928/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
data/AB/1929/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
+data/AB/1930/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/4d405c757e074878b46adb93e0dbecd3_python.cwl b/.renku/workflow/4d405c757e074878b46adb93e0dbecd3_python.cwl
new file mode 100644
index 00000000..9be19b29
--- /dev/null
+++ b/.renku/workflow/4d405c757e074878b46adb93e0dbecd3_python.cwl
@@ -0,0 +1,61 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_collect_information.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1930/05_annotatedxml.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default:
+ class: File
+ path: ../../data/AB/1930/03_correctedmeta.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_4:
+ default: data/AB/1930/06_collectedinformation.pickle
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_4)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1930
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1930/06_collectedinformation.pickle b/data/AB/1930/06_collectedinformation.pickle
new file mode 100644
index 00000000..25f205e0
--- /dev/null
+++ b/data/AB/1930/06_collectedinformation.pickle
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1e1ba98139e1c1396a95bcca9450d99c97e4fa665d8dad9dbbc2b62fae3246a3
+size 10149419
--
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