From 9d0611d6e6715b70875066ce5ad25e6ee596da07 Mon Sep 17 00:00:00 2001 From: Lilian Gasser <gasserli@ethz.ch> Date: Thu, 28 Feb 2019 15:00:11 +0100 Subject: [PATCH] renku run --isolation --output data/AB/1951/05_annotatedxml.tar.gz python src/python/run_extract_discussions.py data/politicians/yearly_pickles/1951_MPs.pickle data/AB/1951/04_correctedxml.tar.gz data/AB/1951/03_correctedmeta.tar.gz data/lists/not_names.txt data/lists/dict_overlaps.pickle data/AB/1951/05_annotatedxml.tar.gz --- .gitattributes | 1 + ...196285329a2430690b9e4b4dd70ee63_python.cwl | 91 +++++++++++++++++++ data/AB/1951/05_annotatedxml.tar.gz | 3 + 3 files changed, 95 insertions(+) create mode 100644 .renku/workflow/f196285329a2430690b9e4b4dd70ee63_python.cwl create mode 100644 data/AB/1951/05_annotatedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 5e1530c9..cb38f32f 100644 --- a/.gitattributes +++ b/.gitattributes @@ -424,3 +424,4 @@ data/AB/1947/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1948/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1949/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1950/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1951/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/f196285329a2430690b9e4b4dd70ee63_python.cwl b/.renku/workflow/f196285329a2430690b9e4b4dd70ee63_python.cwl new file mode 100644 index 00000000..cb919633 --- /dev/null +++ b/.renku/workflow/f196285329a2430690b9e4b4dd70ee63_python.cwl @@ -0,0 +1,91 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_discussions.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/politicians/yearly_pickles/1951_MPs.pickle + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1951/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: + class: File + path: ../../data/AB/1951/03_correctedmeta.tar.gz + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: File + input_5: + default: + class: File + path: ../../data/lists/not_names.txt + inputBinding: + position: 5 + separate: true + shellQuote: true + streamable: false + type: File + input_6: + default: + class: File + path: ../../data/lists/dict_overlaps.pickle + inputBinding: + position: 6 + separate: true + shellQuote: true + streamable: false + type: File + input_7: + default: data/AB/1951/05_annotatedxml.tar.gz + inputBinding: + position: 7 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_7) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1951 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1951/05_annotatedxml.tar.gz b/data/AB/1951/05_annotatedxml.tar.gz new file mode 100644 index 00000000..a823e39f --- /dev/null +++ b/data/AB/1951/05_annotatedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:33c3c53102fe8fafd5a784de2a927e1ed99be24f1eb208a7cda8c60672bb48a9 +size 9212404 -- GitLab