diff --git a/.gitattributes b/.gitattributes index a4914cdc4dce479729358387ade2aab61a3ecff1..b4d26d9342f3a927839697268275ef978ab38f0d 100644 --- a/.gitattributes +++ b/.gitattributes @@ -377,3 +377,4 @@ data/AB/1900/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1901/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1902/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1903/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1904/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/b6f8ac6105e64a92a6adf762b3e411f3_python.cwl b/.renku/workflow/b6f8ac6105e64a92a6adf762b3e411f3_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..f6d94c409a1fc7deb9f4ff6f57bb4b63721cee21 --- /dev/null +++ b/.renku/workflow/b6f8ac6105e64a92a6adf762b3e411f3_python.cwl @@ -0,0 +1,61 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_collect_information.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1904/05_annotatedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1904/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: data/AB/1904/06_collectedinformation.pickle + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_4) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1904 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1904/06_collectedinformation.pickle b/data/AB/1904/06_collectedinformation.pickle new file mode 100644 index 0000000000000000000000000000000000000000..3af84e8990f035ac02e7d888f450621c1a67e759 --- /dev/null +++ b/data/AB/1904/06_collectedinformation.pickle @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a1c58bd4dece50a8bd50df33bcfae7fb8b4812c33931fba50fab2a8b1a4b0530 +size 3064002