diff --git a/.gitattributes b/.gitattributes index e67ad9797a17bb996e2c9d490b8c4f6ddea0921d..bfb3952ddd6b215c8fe8b106b2c9c2c4b648e99f 100644 --- a/.gitattributes +++ b/.gitattributes @@ -3,13 +3,6 @@ data/AB/1891/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1892/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1893/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1891/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1894/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1895/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1896/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1897/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1898/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1899/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1900/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1892/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1893/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1894/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text @@ -44,29 +37,3 @@ data/AB/1922/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1923/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1924/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1925/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1901/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1902/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1903/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1904/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1905/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1906/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1907/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1908/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1909/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1910/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1911/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1912/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1913/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1914/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1915/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1916/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1917/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1918/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1919/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1920/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1921/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1922/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1923/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1924/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1925/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text -data/AB/1891/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/0134625b44c64399bf6b27b95b5decbd_python.cwl b/.renku/workflow/0134625b44c64399bf6b27b95b5decbd_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..eb23b047a57f11190dcf2aa44977dd23485d8497 --- /dev/null +++ b/.renku/workflow/0134625b44c64399bf6b27b95b5decbd_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1907/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1907/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1907 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/07000f8c08c84b08aa11fa19f292b975_python.cwl b/.renku/workflow/07000f8c08c84b08aa11fa19f292b975_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..4708b818aacad65b9dbea2d73b3293e0c4b65dc2 --- /dev/null +++ b/.renku/workflow/07000f8c08c84b08aa11fa19f292b975_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1915/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1915/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1915 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/09c451320b59427fb60bdf37badcb67d_python.cwl b/.renku/workflow/09c451320b59427fb60bdf37badcb67d_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..3f213aa6523aa3a77d59647d4c36c474902f6702 --- /dev/null +++ b/.renku/workflow/09c451320b59427fb60bdf37badcb67d_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1921/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1921/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1921 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/09ece46a1d5e44a3b804495a76a57aab_python.cwl b/.renku/workflow/09ece46a1d5e44a3b804495a76a57aab_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..05054bf40c1e7b6a3703aa1d434373e217e333c1 --- /dev/null +++ b/.renku/workflow/09ece46a1d5e44a3b804495a76a57aab_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1925/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1925/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1925 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/0b606b992b0d41e9b626bc38519393fc_python.cwl b/.renku/workflow/0b606b992b0d41e9b626bc38519393fc_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..d0413aa414f7f5beb71e7b06adee137aeeb99505 --- /dev/null +++ b/.renku/workflow/0b606b992b0d41e9b626bc38519393fc_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1916/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1916/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1916 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/113abe1329c848b8a140aa344d36dcca_python.cwl b/.renku/workflow/113abe1329c848b8a140aa344d36dcca_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..b7be8aeb9b76e8477eb1b91f6badfdc4a1ad8d15 --- /dev/null +++ b/.renku/workflow/113abe1329c848b8a140aa344d36dcca_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1904/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1904/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1904 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/1a984ee680f64fe19730b24a080d0eef_python.cwl b/.renku/workflow/1a984ee680f64fe19730b24a080d0eef_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..4a8fd25834e0e3609260e23aa921049f19a70986 --- /dev/null +++ b/.renku/workflow/1a984ee680f64fe19730b24a080d0eef_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1911/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1911/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1911 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/21514d64f82c4f7399fd262c1a43df81_python.cwl b/.renku/workflow/21514d64f82c4f7399fd262c1a43df81_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..83676c5d013399834276f14f3f9bab0ce7c81c71 --- /dev/null +++ b/.renku/workflow/21514d64f82c4f7399fd262c1a43df81_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1918/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1918/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1918 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/2bb430f219a7477582cd38750b16344c_python.cwl b/.renku/workflow/2bb430f219a7477582cd38750b16344c_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..1fc741bb103b9fd57878a6f60275a358397bd5da --- /dev/null +++ b/.renku/workflow/2bb430f219a7477582cd38750b16344c_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1923/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1923/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1923 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/362e1c8d900242068c82670677830cb5_python.cwl b/.renku/workflow/362e1c8d900242068c82670677830cb5_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..1449cd7c6073c2939891c8cf2d32661066dd79bb --- /dev/null +++ b/.renku/workflow/362e1c8d900242068c82670677830cb5_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1917/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1917/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1917 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/3d6f16e1a94d4cffa56bee8413551e76_python.cwl b/.renku/workflow/3d6f16e1a94d4cffa56bee8413551e76_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..cd69b9e60700d44931ec232fd94cd2798d23f99e --- /dev/null +++ b/.renku/workflow/3d6f16e1a94d4cffa56bee8413551e76_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1914/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1914/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1914 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/41b71f3b5d174a75bfad0e51f84e1b2d_python.cwl b/.renku/workflow/41b71f3b5d174a75bfad0e51f84e1b2d_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..eb27be13292079af60ff1688f008ddf715c31395 --- /dev/null +++ b/.renku/workflow/41b71f3b5d174a75bfad0e51f84e1b2d_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1910/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1910/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1910 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/43056c2958f14e56a2c8552e6fc5ec6f_python.cwl b/.renku/workflow/43056c2958f14e56a2c8552e6fc5ec6f_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..046effa370c63a18f72ce04897300bc5b6a5aad7 --- /dev/null +++ b/.renku/workflow/43056c2958f14e56a2c8552e6fc5ec6f_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1908/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1908/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1908 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/45c7d66af65e44b6a70db8bfa39794ac_python.cwl b/.renku/workflow/45c7d66af65e44b6a70db8bfa39794ac_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..82e4571279bf74ab2d76814a00e20bf28886f080 --- /dev/null +++ b/.renku/workflow/45c7d66af65e44b6a70db8bfa39794ac_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1895/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1895/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1895 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/4cf159cef6f948fba8b9972c0c573938_python.cwl b/.renku/workflow/4cf159cef6f948fba8b9972c0c573938_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..35455e33e26e78375c044b58a6de06b9e5c519cf --- /dev/null +++ b/.renku/workflow/4cf159cef6f948fba8b9972c0c573938_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1894/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1894/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1894 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/5a0017a638b443959606d67aa04b7fbd_python.cwl b/.renku/workflow/5a0017a638b443959606d67aa04b7fbd_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..431b870be923936f6f2bd6b56270713633447d6e --- /dev/null +++ b/.renku/workflow/5a0017a638b443959606d67aa04b7fbd_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1901/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1901/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1901 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..6fe0cfc6d2cc6537ab845e3a869a6f181fd8e6c3 --- /dev/null +++ b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1891/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1891/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1891 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/6195b525672344f68b6018e91f79e20f_python.cwl b/.renku/workflow/6195b525672344f68b6018e91f79e20f_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..f355b21514c45af88ec85b836a2dfd9ea5875c7d --- /dev/null +++ b/.renku/workflow/6195b525672344f68b6018e91f79e20f_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1900/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1900/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1900 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/6599edb3c91c42c3ad6624b8959dad97_python.cwl b/.renku/workflow/6599edb3c91c42c3ad6624b8959dad97_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..4020d70e6fc2841b95c03b0960acb81eee82601e --- /dev/null +++ b/.renku/workflow/6599edb3c91c42c3ad6624b8959dad97_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1920/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1920/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1920 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/6d724451628547fc9e9786ebe333a97b_python.cwl b/.renku/workflow/6d724451628547fc9e9786ebe333a97b_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..2e4592888534e25b22bf9f148396316c751a9de7 --- /dev/null +++ b/.renku/workflow/6d724451628547fc9e9786ebe333a97b_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1922/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1922/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1922 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl b/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..c5415aa122acef9f7860839ad3deecab3e3d2a5c --- /dev/null +++ b/.renku/workflow/72579b6c928c49709680074ba1bff299_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1919/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1919/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1919 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/725b4b7206f747a7a283396bdd0156e1_python.cwl b/.renku/workflow/725b4b7206f747a7a283396bdd0156e1_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..a77062bc1b39e835fa0b528d14458903e7a61255 --- /dev/null +++ b/.renku/workflow/725b4b7206f747a7a283396bdd0156e1_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1897/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1897/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1897 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/8b8bfceafdef438686a5e5e8ae4feff3_python.cwl b/.renku/workflow/8b8bfceafdef438686a5e5e8ae4feff3_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..5f9bfce89127e5a2f410d53d1c258abf405908ff --- /dev/null +++ b/.renku/workflow/8b8bfceafdef438686a5e5e8ae4feff3_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1912/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1912/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1912 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/8cd9002784704cb0bfb8f44b5f5acf71_python.cwl b/.renku/workflow/8cd9002784704cb0bfb8f44b5f5acf71_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..1cea10459f799eb85c7142d3d5bcaf3f34f5a82d --- /dev/null +++ b/.renku/workflow/8cd9002784704cb0bfb8f44b5f5acf71_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1902/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1902/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1902 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/90d0c14f67804d9694908085fc4ac36c_python.cwl b/.renku/workflow/90d0c14f67804d9694908085fc4ac36c_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..b2814e9594921b8dfdd9e93c3d6d3f0c15e32af8 --- /dev/null +++ b/.renku/workflow/90d0c14f67804d9694908085fc4ac36c_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1893/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1893/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1893 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/963b3f1319b5444096f8321b5e2ef1d6_python.cwl b/.renku/workflow/963b3f1319b5444096f8321b5e2ef1d6_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..e922b5bd4db873ecf8a707d36f34fe8c65bd742d --- /dev/null +++ b/.renku/workflow/963b3f1319b5444096f8321b5e2ef1d6_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1909/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1909/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1909 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/9e8fab6ce9a241ebb0f0d48701b5f495_python.cwl b/.renku/workflow/9e8fab6ce9a241ebb0f0d48701b5f495_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..b808652745e1dcebff5987b3cda0b30115a54821 --- /dev/null +++ b/.renku/workflow/9e8fab6ce9a241ebb0f0d48701b5f495_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1899/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1899/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1899 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/a037def564034bdfa1f14ee4452e1b1a_python.cwl b/.renku/workflow/a037def564034bdfa1f14ee4452e1b1a_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..28222079c3e803d0c56d4f55b396e391d9f85974 --- /dev/null +++ b/.renku/workflow/a037def564034bdfa1f14ee4452e1b1a_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1906/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1906/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1906 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/a2443cc9926047f393466483b1cbecc1_python.cwl b/.renku/workflow/a2443cc9926047f393466483b1cbecc1_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..820121b8f8bd4542dc208e7e4a86c6a0cb31ffbd --- /dev/null +++ b/.renku/workflow/a2443cc9926047f393466483b1cbecc1_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1913/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1913/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1913 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/a568622380734974b54df06350ebd1b7_python.cwl b/.renku/workflow/a568622380734974b54df06350ebd1b7_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..8f7d9f6f356d99d65ebe4ed2d87cd3c862f85d9d --- /dev/null +++ b/.renku/workflow/a568622380734974b54df06350ebd1b7_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1924/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1924/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1924 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/b0fb11ee2493439197b633b9ad97686f_python.cwl b/.renku/workflow/b0fb11ee2493439197b633b9ad97686f_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..6cc72ab18d96580bf6fa4835067870baf4d951b7 --- /dev/null +++ b/.renku/workflow/b0fb11ee2493439197b633b9ad97686f_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1905/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1905/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1905 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/d6d4efa1202649e1a9cb3282dfde7afd_python.cwl b/.renku/workflow/d6d4efa1202649e1a9cb3282dfde7afd_python.cwl new file mode 100644 index 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InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1896 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/e70b158788334dc89bfd1b2207f2ec8b_python.cwl b/.renku/workflow/e70b158788334dc89bfd1b2207f2ec8b_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..cd16afda51bf80397defa522ddfb4d29a54d3fbc --- /dev/null +++ b/.renku/workflow/e70b158788334dc89bfd1b2207f2ec8b_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1903/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + 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../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1892/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1892/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1892 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/.renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl b/.renku/workflow/e95b78dce28d46d49a9658bc3ad8fafe_python.cwl new file mode 100644 index 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InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1898 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1891/02_extractedxml.tar.gz b/data/AB/1891/02_extractedxml.tar.gz index a52f1fbe2011f4658417d578622421048efabf72..6e68262b753d30ac54486b1d51f8f21b34f6d3d6 100644 --- a/data/AB/1891/02_extractedxml.tar.gz +++ b/data/AB/1891/02_extractedxml.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:4fdbaeb1b68ff4ad3a5d23ab109638a0e68ad62a969a06fd5486eeaad9020a05 -size 43120374 +oid sha256:408b299adff3e39a3d195b486f89c8bfcf6a85ffb91a30256d559cd79b599b8b +size 43120412 diff --git a/data/AB/1892/02_extractedxml.tar.gz b/data/AB/1892/02_extractedxml.tar.gz index 9798fcff3d534b0ab1c60f914a164629428f2ed4..e286b5606fca7f2f433cdfd7a5de8fcda5eb031c 100644 --- a/data/AB/1892/02_extractedxml.tar.gz +++ b/data/AB/1892/02_extractedxml.tar.gz @@ -1,3 +1,3 @@ version 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a/data/AB/1919/02_extractedxml.tar.gz +++ b/data/AB/1919/02_extractedxml.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:790099ab2f39cba7de63496c24603346830c977b0dabf1213d60745be2bd17b0 -size 145566284 +oid sha256:04c4981a14d7981dde0ab8c116c43bf92b99386872224049c8ee7d5f2a163d1a +size 145566318 diff --git a/data/AB/1920/02_extractedxml.tar.gz b/data/AB/1920/02_extractedxml.tar.gz index bb37cebc180759febac7a558d2dafcaa5c2eb5e4..a3653f796855a30f1fa34e9e98867394c56bcd1a 100644 --- a/data/AB/1920/02_extractedxml.tar.gz +++ b/data/AB/1920/02_extractedxml.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:c1427f6549b4856fb1fedf77fef914c4a92b7232acfa231b44b4ee18404a321c -size 140048195 +oid sha256:35df36b6c4277920577ad4b03243a295f72c3cd930daf4cdd2986a7eee0e9d72 +size 140048209 diff --git a/data/AB/1921/02_extractedxml.tar.gz b/data/AB/1921/02_extractedxml.tar.gz index 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a/data/AB/1925/02_extractedxml.tar.gz b/data/AB/1925/02_extractedxml.tar.gz index fe91216c88ecd99241c6dd85dfb0b9ec5ba78658..be28bf3a7ae22a70ee4f4011085d13cf21bb9909 100644 --- a/data/AB/1925/02_extractedxml.tar.gz +++ b/data/AB/1925/02_extractedxml.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:97b5654a8ff3b1784295c0eba1539328d5ff9d01a7f4a2a54c4441a838660477 -size 117419406 +oid sha256:4ce973d351d5e1198ccaa5170576c2da1c6370c6b7e4b0365e88a2cb9a89892a +size 117419414 diff --git a/src/python/run_correctxml.py b/src/python/run_correctxml.py index 4d2a0ebaabaef3cbd965a6a66ebbc762975aec6a..45543847c34d783fb8792afb882c159f7a69ed5a 100644 --- a/src/python/run_correctxml.py +++ b/src/python/run_correctxml.py @@ -53,6 +53,6 @@ for infile in files_proc: # Commands to get the compressed version of the file #data/AB/${year}/02_extractedxml.tar.gz -utils_proc.compress_tar(output_file) - +utils_proc.compress_tar(output_file) + print('Total time for correction of year %d: %f' % (int(year_tocomp) ,(time.time() - t1))) \ No newline at end of file diff --git a/src/python/run_extract_origxml.py b/src/python/run_extract_origxml.py index bb803280d9946cb400d6a0d9fefae8607a51f970..e283788c582df6027b698030f1348f4a66f11342 100644 --- a/src/python/run_extract_origxml.py +++ b/src/python/run_extract_origxml.py @@ -52,6 +52,6 @@ for infile in files_proc: # Commands to get the compressed version of the file #data/AB/${year}/02_extractedxml.tar.gz -utils_proc.compress_tar(output_file) - +utils_proc.compress_tar(output_file) + print('Total time for year %d: %f' % (int(year_tocomp) ,(time.time() - t1))) \ No newline at end of file diff --git a/src/python/utils_proc.py b/src/python/utils_proc.py index a4f55a026cd161def86508233985eb2c42b6dc10..7348be81153232cfda56abd863a6f957acf9a061 100644 --- a/src/python/utils_proc.py +++ b/src/python/utils_proc.py @@ -158,7 +158,7 @@ def compress_tar(infile, outname = ''): call_with_out(c2) c3 = 'rm -rf ' + str(year) call_with_out(c3) - + def correct_metadata(year, id_doc, flag_end):