From 79e0d8a0981908a57e16a1d528a3adbb78b9dd7d Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Thu, 7 Feb 2019 15:21:42 +0000 Subject: [PATCH] renku run --isolation python src/python/run_extract_discussions.py data/politicians/lastnames/1938_MPs.pickle data/AB/1938/04_correctedxml.tar.gz data/AB/1938/03_correctedmeta.tar.gz data/lists/not_names.txt data/lists/dict_overlaps.pickle data/AB/1938/05_annotatedxml.tar.gz --- .gitattributes | 1 + ...57850088f8c4223bedcf8929bab3929_python.cwl | 91 +++++++++++++++++++ data/AB/1938/05_annotatedxml.tar.gz | 3 + 3 files changed, 95 insertions(+) create mode 100644 .renku/workflow/b57850088f8c4223bedcf8929bab3929_python.cwl create mode 100644 data/AB/1938/05_annotatedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index abeb3b20..5a1c3005 100644 --- a/.gitattributes +++ b/.gitattributes @@ -306,3 +306,4 @@ data/AB/1934/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1935/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1936/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1937/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1938/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/b57850088f8c4223bedcf8929bab3929_python.cwl b/.renku/workflow/b57850088f8c4223bedcf8929bab3929_python.cwl new file mode 100644 index 00000000..59e6170b --- /dev/null +++ b/.renku/workflow/b57850088f8c4223bedcf8929bab3929_python.cwl @@ -0,0 +1,91 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_discussions.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/politicians/lastnames/1938_MPs.pickle + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1938/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: + class: File + path: ../../data/AB/1938/03_correctedmeta.tar.gz + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: File + input_5: + default: + class: File + path: ../../data/lists/not_names.txt + inputBinding: + position: 5 + separate: true + shellQuote: true + streamable: false + type: File + input_6: + default: + class: File + path: ../../data/lists/dict_overlaps.pickle + inputBinding: + position: 6 + separate: true + shellQuote: true + streamable: false + type: File + input_7: + default: data/AB/1938/05_annotatedxml.tar.gz + inputBinding: + position: 7 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_7) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1938 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1938/05_annotatedxml.tar.gz b/data/AB/1938/05_annotatedxml.tar.gz new file mode 100644 index 00000000..6e84f59d --- /dev/null +++ b/data/AB/1938/05_annotatedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d27fb1d86569eedecc88c815791d9c59061e0a4e5c99293c3ad9ac15013f3266 +size 11329732 -- GitLab