From 76f730c2fd09528b5bf72c78f12ad2a3d3f4c1ce Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Fri, 25 Jan 2019 04:11:22 +0000
Subject: [PATCH] renku run python src/python/run_extract_origxml.py
 data/AB//1977/00_rawpdfs.tar.gz data/AB//1977/02_extractedxml.tar.gz

---
 .gitattributes                                |  7 +++
 ...5db25b9be3e4de8a799064ce8a81038_python.cwl | 51 +++++++++++++++++++
 ...b69fad35c574cbfb28b966576580e0d_python.cwl | 51 +++++++++++++++++++
 ...ed9d30b55bc41c7aeb714cd1d863012_python.cwl | 51 +++++++++++++++++++
 ...4a366e49dc54eee9cc13a47e884b9e5_python.cwl | 51 +++++++++++++++++++
 data/AB/1974/04_correctedxml.tar.gz           |  3 ++
 data/AB/1977/02_extractedxml.tar.gz           |  3 ++
 data/AB/1980/02_extractedxml.tar.gz           |  3 ++
 data/AB/1981/02_extractedxml.tar.gz           |  3 ++
 9 files changed, 223 insertions(+)
 create mode 100644 .renku/workflow/55db25b9be3e4de8a799064ce8a81038_python.cwl
 create mode 100644 .renku/workflow/7b69fad35c574cbfb28b966576580e0d_python.cwl
 create mode 100644 .renku/workflow/ced9d30b55bc41c7aeb714cd1d863012_python.cwl
 create mode 100644 .renku/workflow/d4a366e49dc54eee9cc13a47e884b9e5_python.cwl
 create mode 100644 data/AB/1974/04_correctedxml.tar.gz
 create mode 100644 data/AB/1977/02_extractedxml.tar.gz
 create mode 100644 data/AB/1980/02_extractedxml.tar.gz
 create mode 100644 data/AB/1981/02_extractedxml.tar.gz

diff --git a/.gitattributes b/.gitattributes
index 384156fc..f891ee52 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -241,5 +241,12 @@ data/AB/1993/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
 data/AB/1994/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
 data/AB/1995/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
 data/AB/1973/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+<<<<<<< HEAD
 data/AB/1975/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
 data/AB/1976/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+=======
+data/AB/1974/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1980/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1981/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+>>>>>>> e664070b2412ace18c8f5adafe5e0cf57e0ffce8
+data/AB/1977/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/55db25b9be3e4de8a799064ce8a81038_python.cwl b/.renku/workflow/55db25b9be3e4de8a799064ce8a81038_python.cwl
new file mode 100644
index 00000000..60cb7b6b
--- /dev/null
+++ b/.renku/workflow/55db25b9be3e4de8a799064ce8a81038_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../src/python/run_extract_origxml.py
+    inputBinding:
+      position: 1
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_2:
+    default:
+      class: File
+      path: ../../data/AB/1981/00_rawpdfs.tar.gz
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_3:
+    default: data/AB/1981/02_extractedxml.tar.gz
+    inputBinding:
+      position: 3
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_3)
+    streamable: false
+    type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: data/AB/1981
+    writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/.renku/workflow/7b69fad35c574cbfb28b966576580e0d_python.cwl b/.renku/workflow/7b69fad35c574cbfb28b966576580e0d_python.cwl
new file mode 100644
index 00000000..bfd6aa94
--- /dev/null
+++ b/.renku/workflow/7b69fad35c574cbfb28b966576580e0d_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../src/python/run_extract_origxml.py
+    inputBinding:
+      position: 1
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_2:
+    default:
+      class: File
+      path: ../../data/AB/1980/00_rawpdfs.tar.gz
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_3:
+    default: data/AB/1980/02_extractedxml.tar.gz
+    inputBinding:
+      position: 3
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_3)
+    streamable: false
+    type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: data/AB/1980
+    writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/.renku/workflow/ced9d30b55bc41c7aeb714cd1d863012_python.cwl b/.renku/workflow/ced9d30b55bc41c7aeb714cd1d863012_python.cwl
new file mode 100644
index 00000000..67dea379
--- /dev/null
+++ b/.renku/workflow/ced9d30b55bc41c7aeb714cd1d863012_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../src/python/run_correctxml.py
+    inputBinding:
+      position: 1
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_2:
+    default:
+      class: File
+      path: ../../data/AB/1974/02_extractedxml.tar.gz
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_3:
+    default: data/AB/1974/04_correctedxml.tar.gz
+    inputBinding:
+      position: 3
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_3)
+    streamable: false
+    type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: data/AB/1974
+    writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/.renku/workflow/d4a366e49dc54eee9cc13a47e884b9e5_python.cwl b/.renku/workflow/d4a366e49dc54eee9cc13a47e884b9e5_python.cwl
new file mode 100644
index 00000000..149d7325
--- /dev/null
+++ b/.renku/workflow/d4a366e49dc54eee9cc13a47e884b9e5_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../src/python/run_extract_origxml.py
+    inputBinding:
+      position: 1
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_2:
+    default:
+      class: File
+      path: ../../data/AB/1977/00_rawpdfs.tar.gz
+    inputBinding:
+      position: 2
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: File
+  input_3:
+    default: data/AB/1977/02_extractedxml.tar.gz
+    inputBinding:
+      position: 3
+      separate: true
+      shellQuote: true
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputBinding:
+      glob: $(inputs.input_3)
+    streamable: false
+    type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+  listing:
+  - entry: '$({"listing": [], "class": "Directory"})'
+    entryname: data/AB/1977
+    writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1974/04_correctedxml.tar.gz b/data/AB/1974/04_correctedxml.tar.gz
new file mode 100644
index 00000000..4b22e2c3
--- /dev/null
+++ b/data/AB/1974/04_correctedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:51ed18e34920d0f4a6402cf9a96ecdd12dc47ccb3a2abab0976bc5911dff8ec0
+size 22540482
diff --git a/data/AB/1977/02_extractedxml.tar.gz b/data/AB/1977/02_extractedxml.tar.gz
new file mode 100644
index 00000000..d3d86d0b
--- /dev/null
+++ b/data/AB/1977/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:712d29e255e7df6857be63ca07b46fe767193bba618694325da6ab1ad69491e7
+size 314960855
diff --git a/data/AB/1980/02_extractedxml.tar.gz b/data/AB/1980/02_extractedxml.tar.gz
new file mode 100644
index 00000000..9a49a4f3
--- /dev/null
+++ b/data/AB/1980/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d0baf515b60277460abe248e29981e2fb35cb335b5bcd8fe6efcb8d325738f59
+size 325333041
diff --git a/data/AB/1981/02_extractedxml.tar.gz b/data/AB/1981/02_extractedxml.tar.gz
new file mode 100644
index 00000000..94e8d0fa
--- /dev/null
+++ b/data/AB/1981/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e8ff09ddaa77c85d59601eed6e8817489db27a055f353cdef9aae7a28e24db03
+size 341425000
-- 
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