From 6ca371ca8bde1d68051d2ad5c9f76452f7c11573 Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Fri, 7 Dec 2018 17:18:51 +0000
Subject: [PATCH] renku run python src/python/run_correctxml.py
data/AB//1911/02_extractedxml.tar.gz data/AB//1911/04_correctedxml.tar.gz
---
...15a3d7989fc44bab66bc86c87ddb74e_python.cwl | 59 +++++++++++++++++++
data/AB/1911/04_correctedxml.tar.gz | 4 +-
notebooks/RunningClasses.ipynb | 2 +-
3 files changed, 62 insertions(+), 3 deletions(-)
create mode 100644 .renku/workflow/615a3d7989fc44bab66bc86c87ddb74e_python.cwl
diff --git a/.renku/workflow/615a3d7989fc44bab66bc86c87ddb74e_python.cwl b/.renku/workflow/615a3d7989fc44bab66bc86c87ddb74e_python.cwl
new file mode 100644
index 00000000..e688f904
--- /dev/null
+++ b/.renku/workflow/615a3d7989fc44bab66bc86c87ddb74e_python.cwl
@@ -0,0 +1,59 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_correctxml.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1911/02_extractedxml.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default: data/AB/1911/04_correctedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_3)
+ streamable: false
+ type: File
+ output_1:
+ outputBinding:
+ glob: notebooks/RunningClasses.ipynb
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: notebooks
+ writable: true
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1911
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1911/04_correctedxml.tar.gz b/data/AB/1911/04_correctedxml.tar.gz
index 3eaaa2c9..3df7cae6 100644
--- a/data/AB/1911/04_correctedxml.tar.gz
+++ b/data/AB/1911/04_correctedxml.tar.gz
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:ca74aebdf9ecb7f99ee6e57bf64ec455dceb2837059d922b5fa24413e0704156
-size 3467650
+oid sha256:db8b38882650f1a26237ff360a3110fc8d16d1d0785e8ece68677d445b65152e
+size 3464769
diff --git a/notebooks/RunningClasses.ipynb b/notebooks/RunningClasses.ipynb
index 63714898..6cafd23c 100755
--- a/notebooks/RunningClasses.ipynb
+++ b/notebooks/RunningClasses.ipynb
@@ -9,7 +9,7 @@
},
{
"cell_type": "code",
- "execution_count": 101,
+ "execution_count": 102,
"metadata": {},
"outputs": [
{
--
GitLab