From 610735d3fda6fc522e03bdb3eca49f98bed402ca Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Sun, 30 Dec 2018 05:29:42 +0000 Subject: [PATCH] renku run python src/python/run_extract_origxml.py data/AB//1973/00_rawpdfs.tar.gz data/AB//1973/02_extractedxml.tar.gz --- .gitattributes | 1 + ...7da3179579d436184fa782e8a8a23ee_python.cwl | 51 +++++++++++++++++++ data/AB/1973/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/07da3179579d436184fa782e8a8a23ee_python.cwl create mode 100644 data/AB/1973/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 891e7277..aa493d6d 100644 --- a/.gitattributes +++ b/.gitattributes @@ -136,3 +136,4 @@ data/AB/1969/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1970/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1971/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1972/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1973/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/07da3179579d436184fa782e8a8a23ee_python.cwl b/.renku/workflow/07da3179579d436184fa782e8a8a23ee_python.cwl new file mode 100644 index 00000000..311ff1fd --- /dev/null +++ b/.renku/workflow/07da3179579d436184fa782e8a8a23ee_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1973/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1973/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1973 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1973/02_extractedxml.tar.gz b/data/AB/1973/02_extractedxml.tar.gz new file mode 100644 index 00000000..aaa7c3d4 --- /dev/null +++ b/data/AB/1973/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9aaaaa7e7d56dc1626989bf8d0b01235246c48a802f3c3f7675ce202e61c4270 +size 277503825 -- GitLab