From 5da6a0cbc572a5483ca9155965d2cb0c03cf6ab2 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Sat, 29 Dec 2018 06:24:31 +0000 Subject: [PATCH] renku run python src/python/run_extract_origxml.py data/AB//1968/00_rawpdfs.tar.gz data/AB//1968/02_extractedxml.tar.gz --- .gitattributes | 1 + ...9ee47d732124a3fb021a09594d96891_python.cwl | 51 +++++++++++++++++++ data/AB/1968/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/99ee47d732124a3fb021a09594d96891_python.cwl create mode 100644 data/AB/1968/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 4d308d94..ccb436d5 100644 --- a/.gitattributes +++ b/.gitattributes @@ -131,3 +131,4 @@ data/AB/1964/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1965/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1966/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1967/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1968/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/99ee47d732124a3fb021a09594d96891_python.cwl b/.renku/workflow/99ee47d732124a3fb021a09594d96891_python.cwl new file mode 100644 index 00000000..8ee95513 --- /dev/null +++ b/.renku/workflow/99ee47d732124a3fb021a09594d96891_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1968/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1968/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1968 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1968/02_extractedxml.tar.gz b/data/AB/1968/02_extractedxml.tar.gz new file mode 100644 index 00000000..85121fb2 --- /dev/null +++ b/data/AB/1968/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:37c27b26e0d65b6df2883e1921c094cc1f66ed1991ebb0212a725f35d3e242b9 +size 135006309 -- GitLab