From 5c6d976a9048670f8176adfa0287dd3b332ed5e7 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Mon, 24 Dec 2018 17:15:55 +0000 Subject: [PATCH] renku run python src/python/run_extract_origxml.py data/AB//1959/00_rawpdfs.tar.gz data/AB//1959/02_extractedxml.tar.gz --- .gitattributes | 1 + ...25a39fa5da241d5a2124991590bfd4f_python.cwl | 51 +++++++++++++++++++ data/AB/1959/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/625a39fa5da241d5a2124991590bfd4f_python.cwl create mode 100644 data/AB/1959/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 8b5a0ca6..15164a3c 100644 --- a/.gitattributes +++ b/.gitattributes @@ -122,3 +122,4 @@ data/AB/1955/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1956/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1957/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1958/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1959/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/625a39fa5da241d5a2124991590bfd4f_python.cwl b/.renku/workflow/625a39fa5da241d5a2124991590bfd4f_python.cwl new file mode 100644 index 00000000..636a32d3 --- /dev/null +++ b/.renku/workflow/625a39fa5da241d5a2124991590bfd4f_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1959/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1959/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1959 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1959/02_extractedxml.tar.gz b/data/AB/1959/02_extractedxml.tar.gz new file mode 100644 index 00000000..8a207f33 --- /dev/null +++ b/data/AB/1959/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:74017b08f92c5abb2dc149551cc60591703a92a69fa25cfea79640582494da55 +size 114549366 -- GitLab