From 556420a8ee54dbc9ad3c57a74e9f70812b4d8db5 Mon Sep 17 00:00:00 2001
From: Lili Gasser <gasserli@ethz.ch>
Date: Thu, 7 Feb 2019 10:40:59 +0000
Subject: [PATCH] renku run --isolation python
src/python/run_extract_discussions.py
data/politicians/lastnames/1892_MPs.pickle
data/AB/1892/04_correctedxml.tar.gz data/AB/1892/03_correctedmeta.tar.gz
data/lists/not_names.txt data/lists/dict_overlaps.pickle
data/AB/1892/05_annotatedxml.tar.gz
---
.gitattributes | 1 +
...74eeb26c8a14bbaab491035c337c817_python.cwl | 91 +++++++++++++++++++
data/AB/1892/05_annotatedxml.tar.gz | 3 +
3 files changed, 95 insertions(+)
create mode 100644 .renku/workflow/c74eeb26c8a14bbaab491035c337c817_python.cwl
create mode 100644 data/AB/1892/05_annotatedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index f914b75a..93900872 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -259,3 +259,4 @@ data/AB/1978/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1979/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1975/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1891/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1892/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/c74eeb26c8a14bbaab491035c337c817_python.cwl b/.renku/workflow/c74eeb26c8a14bbaab491035c337c817_python.cwl
new file mode 100644
index 00000000..baf064f3
--- /dev/null
+++ b/.renku/workflow/c74eeb26c8a14bbaab491035c337c817_python.cwl
@@ -0,0 +1,91 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_discussions.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/politicians/lastnames/1892_MPs.pickle
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default:
+ class: File
+ path: ../../data/AB/1892/04_correctedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_4:
+ default:
+ class: File
+ path: ../../data/AB/1892/03_correctedmeta.tar.gz
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_5:
+ default:
+ class: File
+ path: ../../data/lists/not_names.txt
+ inputBinding:
+ position: 5
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_6:
+ default:
+ class: File
+ path: ../../data/lists/dict_overlaps.pickle
+ inputBinding:
+ position: 6
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_7:
+ default: data/AB/1892/05_annotatedxml.tar.gz
+ inputBinding:
+ position: 7
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_7)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1892
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1892/05_annotatedxml.tar.gz b/data/AB/1892/05_annotatedxml.tar.gz
new file mode 100644
index 00000000..c11ce6d3
--- /dev/null
+++ b/data/AB/1892/05_annotatedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b536073407eb1f49a3678c7f596bbb4b689dc557dcdb87fc4779dc3d358da23a
+size 1246431
--
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