From 530c7b0fc65feaf601027c617a131c232e4f7925 Mon Sep 17 00:00:00 2001
From: Lili Gasser <gasserli@ethz.ch>
Date: Thu, 7 Feb 2019 13:11:47 +0000
Subject: [PATCH] renku run --isolation python
src/python/run_extract_discussions.py
data/politicians/lastnames/1916_MPs.pickle
data/AB/1916/04_correctedxml.tar.gz data/AB/1916/03_correctedmeta.tar.gz
data/lists/not_names.txt data/lists/dict_overlaps.pickle
data/AB/1916/05_annotatedxml.tar.gz
---
.gitattributes | 1 +
...f1cd56ab2304ed884ea4ed07f583f40_python.cwl | 91 +++++++++++++++++++
data/AB/1916/05_annotatedxml.tar.gz | 3 +
3 files changed, 95 insertions(+)
create mode 100644 .renku/workflow/3f1cd56ab2304ed884ea4ed07f583f40_python.cwl
create mode 100644 data/AB/1916/05_annotatedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index 58cbefb6..6236ca27 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -284,3 +284,4 @@ data/AB/1912/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1913/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1914/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1915/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1916/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/3f1cd56ab2304ed884ea4ed07f583f40_python.cwl b/.renku/workflow/3f1cd56ab2304ed884ea4ed07f583f40_python.cwl
new file mode 100644
index 00000000..3accab93
--- /dev/null
+++ b/.renku/workflow/3f1cd56ab2304ed884ea4ed07f583f40_python.cwl
@@ -0,0 +1,91 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_discussions.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/politicians/lastnames/1916_MPs.pickle
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default:
+ class: File
+ path: ../../data/AB/1916/04_correctedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_4:
+ default:
+ class: File
+ path: ../../data/AB/1916/03_correctedmeta.tar.gz
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_5:
+ default:
+ class: File
+ path: ../../data/lists/not_names.txt
+ inputBinding:
+ position: 5
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_6:
+ default:
+ class: File
+ path: ../../data/lists/dict_overlaps.pickle
+ inputBinding:
+ position: 6
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_7:
+ default: data/AB/1916/05_annotatedxml.tar.gz
+ inputBinding:
+ position: 7
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_7)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1916
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1916/05_annotatedxml.tar.gz b/data/AB/1916/05_annotatedxml.tar.gz
new file mode 100644
index 00000000..42cf10a3
--- /dev/null
+++ b/data/AB/1916/05_annotatedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a0a0cf71cf165e83bb5e3a742c17d64a4f8e4ecfcaaea6d33d7a104b63a386af
+size 3312549
--
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