diff --git a/.gitattributes b/.gitattributes index a3daf6de3e23f17b461de5e27eff60b1fa658567..0f60cb08b89738b0dfe7cc1146c535dcb7a9b0c0 100644 --- a/.gitattributes +++ b/.gitattributes @@ -382,3 +382,4 @@ data/AB/1905/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1906/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1907/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text data/AB/1908/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text +data/AB/1909/06_collectedinformation.pickle filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/1b4fcf86d4414225a13534becb3cd727_python.cwl b/.renku/workflow/1b4fcf86d4414225a13534becb3cd727_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..9551042b3b9b0e16a32498983a57751e393b73e9 --- /dev/null +++ b/.renku/workflow/1b4fcf86d4414225a13534becb3cd727_python.cwl @@ -0,0 +1,61 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_collect_information.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1909/05_annotatedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1909/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: data/AB/1909/06_collectedinformation.pickle + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_4) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1909 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1909/06_collectedinformation.pickle b/data/AB/1909/06_collectedinformation.pickle new file mode 100644 index 0000000000000000000000000000000000000000..5feef2bb17a1b346584b3a4baf09b32114ffc8f8 --- /dev/null +++ b/data/AB/1909/06_collectedinformation.pickle @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c4d629f24e2a29697324dc1386ec5ba6ec61ea9ae237f39f7ff3364948b8034d +size 6281240