From 3ad69fe01704653ef1ba0deca33e1cb5be98fe01 Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Fri, 7 Dec 2018 14:18:51 +0000
Subject: [PATCH] renku run python src/python/run_extract_origxml.py
data/AB/1891/00_rawpdfs.tar.gz data/AB/1891/02_extractedxml.tar.gz
---
...72b352aac8342238f62f172b9b96f9a_python.cwl | 51 +++++++++++++++++++
data/AB/1891/02_extractedxml.tar.gz | 4 +-
data/AB/1891/04_correctedxml.tar.gz | 3 --
3 files changed, 53 insertions(+), 5 deletions(-)
create mode 100644 .renku/workflow/572b352aac8342238f62f172b9b96f9a_python.cwl
delete mode 100644 data/AB/1891/04_correctedxml.tar.gz
diff --git a/.renku/workflow/572b352aac8342238f62f172b9b96f9a_python.cwl b/.renku/workflow/572b352aac8342238f62f172b9b96f9a_python.cwl
new file mode 100644
index 00000000..6fe0cfc6
--- /dev/null
+++ b/.renku/workflow/572b352aac8342238f62f172b9b96f9a_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_origxml.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1891/00_rawpdfs.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default: data/AB/1891/02_extractedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_3)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1891
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1891/02_extractedxml.tar.gz b/data/AB/1891/02_extractedxml.tar.gz
index 6e68262b..dd7f1684 100644
--- a/data/AB/1891/02_extractedxml.tar.gz
+++ b/data/AB/1891/02_extractedxml.tar.gz
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:408b299adff3e39a3d195b486f89c8bfcf6a85ffb91a30256d559cd79b599b8b
-size 43120412
+oid sha256:fd9042dfedfd5e82f5a6ff6d17c5ab31d746d9c4018b67dd6458b96012695c87
+size 43120439
diff --git a/data/AB/1891/04_correctedxml.tar.gz b/data/AB/1891/04_correctedxml.tar.gz
deleted file mode 100644
index 3bf8c314..00000000
--- a/data/AB/1891/04_correctedxml.tar.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:d4649a2d5931b9a944269ea1bfebb3da538e44cceea3b8f3e839d460950ac8b2
-size 3416246
--
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