From 2f5dd8e874703987ae0396423835ffda3b5ae5b0 Mon Sep 17 00:00:00 2001 From: Lilian Gasser <gasserli@ethz.ch> Date: Thu, 28 Feb 2019 10:07:52 +0100 Subject: [PATCH] renku run --isolation --output data/AB/1905/05_annotatedxml.tar.gz python src/python/run_extract_discussions.py data/politicians/yearly_pickles/1905_MPs.pickle data/AB/1905/04_correctedxml.tar.gz data/AB/1905/03_correctedmeta.tar.gz data/lists/not_names.txt data/lists/dict_overlaps.pickle data/AB/1905/05_annotatedxml.tar.gz --- ...a697e63dccb41e282fbe7ad2bc0d28b_python.cwl | 91 +++++++++++++++++++ data/AB/1905/05_annotatedxml.tar.gz | 3 + 2 files changed, 94 insertions(+) create mode 100644 .renku/workflow/6a697e63dccb41e282fbe7ad2bc0d28b_python.cwl create mode 100644 data/AB/1905/05_annotatedxml.tar.gz diff --git a/.renku/workflow/6a697e63dccb41e282fbe7ad2bc0d28b_python.cwl b/.renku/workflow/6a697e63dccb41e282fbe7ad2bc0d28b_python.cwl new file mode 100644 index 00000000..3ff79aed --- /dev/null +++ b/.renku/workflow/6a697e63dccb41e282fbe7ad2bc0d28b_python.cwl @@ -0,0 +1,91 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_discussions.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/politicians/yearly_pickles/1905_MPs.pickle + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: + class: File + path: ../../data/AB/1905/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: File + input_4: + default: + class: File + path: ../../data/AB/1905/03_correctedmeta.tar.gz + inputBinding: + position: 4 + separate: true + shellQuote: true + streamable: false + type: File + input_5: + default: + class: File + path: ../../data/lists/not_names.txt + inputBinding: + position: 5 + separate: true + shellQuote: true + streamable: false + type: File + input_6: + default: + class: File + path: ../../data/lists/dict_overlaps.pickle + inputBinding: + position: 6 + separate: true + shellQuote: true + streamable: false + type: File + input_7: + default: data/AB/1905/05_annotatedxml.tar.gz + inputBinding: + position: 7 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_7) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1905 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1905/05_annotatedxml.tar.gz b/data/AB/1905/05_annotatedxml.tar.gz new file mode 100644 index 00000000..3dcc411f --- /dev/null +++ b/data/AB/1905/05_annotatedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4311f3d79db21ab51c376eff6c2ff3f11b6ce4ecd1ac47e083be358b89251046 +size 6927456 -- GitLab