From 27bb5279c2de4aeeb014e74ecc568b616e193d0f Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Thu, 3 Jan 2019 04:06:50 +0000 Subject: [PATCH] renku run python src/python/run_correctxml.py data/AB//1959/02_extractedxml.tar.gz data/AB//1959/04_correctedxml.tar.gz --- .gitattributes | 1 + ...45813652df24f53b4a9f8331086976a_python.cwl | 51 +++++++++++++++++++ data/AB/1959/04_correctedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/f45813652df24f53b4a9f8331086976a_python.cwl create mode 100644 data/AB/1959/04_correctedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 7c204692..e72ab84b 100644 --- a/.gitattributes +++ b/.gitattributes @@ -156,3 +156,4 @@ data/AB/1955/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1956/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1957/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1958/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1959/04_correctedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/f45813652df24f53b4a9f8331086976a_python.cwl b/.renku/workflow/f45813652df24f53b4a9f8331086976a_python.cwl new file mode 100644 index 00000000..b79f0c58 --- /dev/null +++ b/.renku/workflow/f45813652df24f53b4a9f8331086976a_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correctxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1959/02_extractedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1959/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1959 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1959/04_correctedxml.tar.gz b/data/AB/1959/04_correctedxml.tar.gz new file mode 100644 index 00000000..0e021d5c --- /dev/null +++ b/data/AB/1959/04_correctedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eed10d47758fdb33d99f6848a0024cdbd49356b3e67fa756f5b35f1c5a56cc67 +size 8817306 -- GitLab