From 1d1c36d6d39f37c9462a8dc2437219345940c763 Mon Sep 17 00:00:00 2001
From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch>
Date: Fri, 30 Nov 2018 13:14:42 +0000
Subject: [PATCH] renku run python src/python/run_extract_origxml.py
data/AB/1891/00_rawpdfs.tar.gz data/AB/1891/02_extractedxml.tar.gz
---
.gitattributes | 1 +
...d9113bd3e2c4a109fdb2b91acddef69_python.cwl | 51 +++++++++++++++++++
data/AB/1891/02_extractedxml.tar.gz | 3 ++
3 files changed, 55 insertions(+)
create mode 100644 .renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl
create mode 100644 data/AB/1891/02_extractedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index 18ee830b..d544dc17 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -2,3 +2,4 @@ data/AB/*/*tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1891/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1892/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1893/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1891/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl
new file mode 100644
index 00000000..6fe0cfc6
--- /dev/null
+++ b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl
@@ -0,0 +1,51 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_origxml.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/AB/1891/00_rawpdfs.tar.gz
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default: data/AB/1891/02_extractedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_3)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1891
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1891/02_extractedxml.tar.gz b/data/AB/1891/02_extractedxml.tar.gz
new file mode 100644
index 00000000..6e68262b
--- /dev/null
+++ b/data/AB/1891/02_extractedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:408b299adff3e39a3d195b486f89c8bfcf6a85ffb91a30256d559cd79b599b8b
+size 43120412
--
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