diff --git a/.gitattributes b/.gitattributes index 18ee830be1a5b51eca58f6dda667870c3e9b6f03..d544dc1716f4948f29c55f48ee766cfb3ae8b031 100644 --- a/.gitattributes +++ b/.gitattributes @@ -2,3 +2,4 @@ data/AB/*/*tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1891/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1892/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1893/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1891/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl new file mode 100644 index 0000000000000000000000000000000000000000..6fe0cfc6d2cc6537ab845e3a869a6f181fd8e6c3 --- /dev/null +++ b/.renku/workflow/5d9113bd3e2c4a109fdb2b91acddef69_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1891/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1891/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1891 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1891/02_extractedxml.tar.gz b/data/AB/1891/02_extractedxml.tar.gz new file mode 100644 index 0000000000000000000000000000000000000000..6e68262b753d30ac54486b1d51f8f21b34f6d3d6 --- /dev/null +++ b/data/AB/1891/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:408b299adff3e39a3d195b486f89c8bfcf6a85ffb91a30256d559cd79b599b8b +size 43120412