From 14f8b6fa6bd519a12f6f6a938ebc95ea185df164 Mon Sep 17 00:00:00 2001
From: Lili Gasser <gasserli@ethz.ch>
Date: Thu, 7 Feb 2019 16:16:42 +0000
Subject: [PATCH] renku run --isolation python
src/python/run_extract_discussions.py
data/politicians/lastnames/1942_MPs.pickle
data/AB/1942/04_correctedxml.tar.gz data/AB/1942/03_correctedmeta.tar.gz
data/lists/not_names.txt data/lists/dict_overlaps.pickle
data/AB/1942/05_annotatedxml.tar.gz
---
.gitattributes | 1 +
...bc6e8e7b6554803be67bfb725702458_python.cwl | 91 +++++++++++++++++++
data/AB/1942/05_annotatedxml.tar.gz | 3 +
3 files changed, 95 insertions(+)
create mode 100644 .renku/workflow/abc6e8e7b6554803be67bfb725702458_python.cwl
create mode 100644 data/AB/1942/05_annotatedxml.tar.gz
diff --git a/.gitattributes b/.gitattributes
index 99b4a102..67e15b86 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -310,3 +310,4 @@ data/AB/1938/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1939/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1940/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
data/AB/1941/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
+data/AB/1942/05_annotatedxml.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/workflow/abc6e8e7b6554803be67bfb725702458_python.cwl b/.renku/workflow/abc6e8e7b6554803be67bfb725702458_python.cwl
new file mode 100644
index 00000000..210ac3d6
--- /dev/null
+++ b/.renku/workflow/abc6e8e7b6554803be67bfb725702458_python.cwl
@@ -0,0 +1,91 @@
+arguments: []
+baseCommand:
+- python
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default:
+ class: File
+ path: ../../src/python/run_extract_discussions.py
+ inputBinding:
+ position: 1
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_2:
+ default:
+ class: File
+ path: ../../data/politicians/lastnames/1942_MPs.pickle
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_3:
+ default:
+ class: File
+ path: ../../data/AB/1942/04_correctedxml.tar.gz
+ inputBinding:
+ position: 3
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_4:
+ default:
+ class: File
+ path: ../../data/AB/1942/03_correctedmeta.tar.gz
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_5:
+ default:
+ class: File
+ path: ../../data/lists/not_names.txt
+ inputBinding:
+ position: 5
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_6:
+ default:
+ class: File
+ path: ../../data/lists/dict_overlaps.pickle
+ inputBinding:
+ position: 6
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_7:
+ default: data/AB/1942/05_annotatedxml.tar.gz
+ inputBinding:
+ position: 7
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_7)
+ streamable: false
+ type: File
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/AB/1942
+ writable: true
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/AB/1942/05_annotatedxml.tar.gz b/data/AB/1942/05_annotatedxml.tar.gz
new file mode 100644
index 00000000..f339f23e
--- /dev/null
+++ b/data/AB/1942/05_annotatedxml.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dedcc95cb7285fffef6d4fc18bc243063e44f0919c99c8d70ec948ee10b3cf1f
+size 3809239
--
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