From 0c95ecad274f378b4ba2c9c434fcc44d033b0b6a Mon Sep 17 00:00:00 2001 From: Lili Gasser <gasserli@ethz.ch> Date: Mon, 21 Jan 2019 16:02:00 +0000 Subject: [PATCH] renku run python src/python/run_correct_meta.py data/AB//1990/01_rawmeta.tar.gz data/AB//1990/03_correctedmeta.tar.gz --- .gitattributes | 1 + ...875b82781be403eb2121e04bd9929cb_python.cwl | 51 +++++++++++++++++++ data/AB/1990/03_correctedmeta.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/e875b82781be403eb2121e04bd9929cb_python.cwl create mode 100644 data/AB/1990/03_correctedmeta.tar.gz diff --git a/.gitattributes b/.gitattributes index 1f7bf763..3268e739 100644 --- a/.gitattributes +++ b/.gitattributes @@ -233,3 +233,4 @@ data/AB/1986/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1987/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1988/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1989/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1990/03_correctedmeta.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/e875b82781be403eb2121e04bd9929cb_python.cwl b/.renku/workflow/e875b82781be403eb2121e04bd9929cb_python.cwl new file mode 100644 index 00000000..41d13343 --- /dev/null +++ b/.renku/workflow/e875b82781be403eb2121e04bd9929cb_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correct_meta.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1990/01_rawmeta.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1990/03_correctedmeta.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1990 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1990/03_correctedmeta.tar.gz b/data/AB/1990/03_correctedmeta.tar.gz new file mode 100644 index 00000000..e2efe104 --- /dev/null +++ b/data/AB/1990/03_correctedmeta.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:721806fbbe6bba47fe6fe7c201f0d7f152b95a8377edb76513e9e55c9891c747 +size 2088960 -- GitLab