From 074d8127835fbfe40cef43031c107b9b6cfb4138 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Tue, 4 Dec 2018 07:42:31 +0000 Subject: [PATCH] renku run python ./src/python/run_extract_origxml.py data/AB//1945/00_rawpdfs.tar.gz data/AB//1945/02_extractedxml.tar.gz --- .gitattributes | 1 + ...d1a4048eb8c4b1ababcd924bc71b42e_python.cwl | 51 +++++++++++++++++++ data/AB/1945/02_extractedxml.tar.gz | 3 ++ 3 files changed, 55 insertions(+) create mode 100644 .renku/workflow/4d1a4048eb8c4b1ababcd924bc71b42e_python.cwl create mode 100644 data/AB/1945/02_extractedxml.tar.gz diff --git a/.gitattributes b/.gitattributes index 9d7c30d6..5a227239 100644 --- a/.gitattributes +++ b/.gitattributes @@ -90,3 +90,4 @@ data/AB/1941/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1942/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1943/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text data/AB/1944/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text +data/AB/1945/02_extractedxml.tar.gz filter=lfs diff=lfs merge=lfs -text diff --git a/.renku/workflow/4d1a4048eb8c4b1ababcd924bc71b42e_python.cwl b/.renku/workflow/4d1a4048eb8c4b1ababcd924bc71b42e_python.cwl new file mode 100644 index 00000000..72d55e80 --- /dev/null +++ b/.renku/workflow/4d1a4048eb8c4b1ababcd924bc71b42e_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_extract_origxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1945/00_rawpdfs.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1945/02_extractedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1945 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1945/02_extractedxml.tar.gz b/data/AB/1945/02_extractedxml.tar.gz new file mode 100644 index 00000000..41552b35 --- /dev/null +++ b/data/AB/1945/02_extractedxml.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:495075e0fb15af09f3f7f09eb044ee584f6dcf859be2d4ad22218ea7d45f29dd +size 97805920 -- GitLab